Gene
| Gene Model ID | pfu_aug2.0_1925.1_18604 |
|---|---|
| Locus | scaffold1925.1 : 97369 ... 119285 : - |
| To GenomeBrowser | scaffold1925.1:97369..119285 |
| Genes list of scaffold | scaffold1925.1 |
| Synonym | pfu_aug1.0_17664.1_47116 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| hd domain-containing protein 2 | GO:0043227 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1925.1_18604.t1 | 2 | 1 | HD_3 | 4 | 154 | 0.0 | 222.1 | 0.0 | 0.0 | 167.9 |
| pfu_aug2.0_1925.1_18604.t1 | 2 | 1 | HD | 26 | 128 | 8.3e-12 | 45.1 | 3.7e-12 | 6.1e-09 | 35.9 |
| pfu_aug2.0_1925.1_18604.t1 | 2 | 2 | HD_3 | 153 | 234 | 0.0 | 222.1 | 6.6e-19 | 1.1e-15 | 57.7 |
| pfu_aug2.0_1925.1_18604.t1 | 2 | 2 | HD | 166 | 204 | 8.3e-12 | 45.1 | 0.0023 | 3.8 | 7.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1925.1_18604.t1 | gi|334324164|ref|XP_001380112.2| | PREDICTED: HD domain-containing protein 2 isoform X1 [Monodelphis domestica] | 0.0 |
| pfu_aug2.0_1925.1_18604.t1 | gi|597783911|ref|XP_007255470.1| | PREDICTED: HD domain-containing protein 2 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_1925.1_18604.t1 | gi|554806791|ref|XP_005914321.1| | PREDICTED: HD domain-containing protein 2-like [Haplochromis burtoni] | 0.0 |
| pfu_aug2.0_1925.1_18604.t1 | gi|498940423|ref|XP_004542066.1| | PREDICTED: HD domain-containing protein 2 [Maylandia zebra] | 0.0 |
| pfu_aug2.0_1925.1_18604.t1 | gi|317575829|ref|NP_001187966.1| | HD domain-containing protein 2 [Ictalurus punctatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1925.1_18604.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1925.1_18604.t1 atgaatttagttggtagattaaagagagttaaaaggacaggatgggttctcagaaatgttcagagtccagaatctgtagc agaacatatgtatcgaatggccgtgctgtcattcttggtggaaacaaaatatggcatcaataaagaaaggtgcattaaga tagctttagtacatgacatagctgaatgtatagttggtgacatcacccctgctgatggcttgtcgaaggccgagaagcga cagaaagaggaggcagccatgaaggagattacagcattggtgaacaaagatattggagatgagatatattcattatggct ggaatatgaagagcaatccagtgaagaagctaaatttgtcaaagatctggacaagtttgagatgattcttcaagcccatg aatatgagaaatctgacggccgtcctaacggactacaggaattctttgacagcacagagggcaaattccaaactcgtcag gcagccatgaaggagattacagcattggttaacaaagatattggagatgagatatattcattatggctagaatatgaaga acaatccagtgaagaagctaaatttgtcaaagatctggataagtttgagatgattcttcaagcccatgaatatgagaaat ctgacggccgtcctaatggactacaggaattctttgacagcacagagggcaaattccaaactcgtcaggtgaaggaatgg gcagcagaactgatagagatgagaagaaaagaaaatgacacatga |
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Protein
| Protein ID | pfu_aug2.0_1925.1_18604.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1925.1_18604.t1 MNLVGRLKRVKRTGWVLRNVQSPESVAEHMYRMAVLSFLVETKYGINKERCIKIALVHDIAECIVGDITPADGLSKAEKR QKEEAAMKEITALVNKDIGDEIYSLWLEYEEQSSEEAKFVKDLDKFEMILQAHEYEKSDGRPNGLQEFFDSTEGKFQTRQ AAMKEITALVNKDIGDEIYSLWLEYEEQSSEEAKFVKDLDKFEMILQAHEYEKSDGRPNGLQEFFDSTEGKFQTRQVKEW AAELIEMRRKENDT |
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