Gene
| Gene Model ID | pfu_aug2.0_193.1_10415 |
|---|---|
| Locus | scaffold193.1 : 193099 ... 202631 : - |
| To GenomeBrowser | scaffold193.1:193099..202631 |
| Genes list of scaffold | scaffold193.1 |
| Synonym | pfu_aug1.0_44738.1_63197 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| translation initiation factor eif-2b subunit beta isoform x2 | GO:0003743 GO:0005085 GO:0005851 GO:0006413 GO:0007417 GO:0009408 GO:0009749 GO:0032550 GO:0032555 GO:0035639 GO:0043434 GO:0043547 GO:0044763 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_193.1_10415.t1 | 2 | 1 | IF-2B | 23 | 109 | 1.9e-29 | 102.5 | 1.2e-18 | 6.0e-15 | 54.9 |
| pfu_aug2.0_193.1_10415.t1 | 2 | 2 | IF-2B | 110 | 180 | 1.9e-29 | 102.5 | 3.6e-16 | 1.8e-12 | 46.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_193.1_10415.t1 | gi|564258988|ref|XP_006268420.1| | PREDICTED: translation initiation factor eIF-2B subunit beta isoform X2 [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_193.1_10415.t1 | gi|147900237|ref|NP_001080268.1| | eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa [Xenopus laevis] | 0.0 |
| pfu_aug2.0_193.1_10415.t1 | gi|641755113|ref|XP_008162908.1| | PREDICTED: translation initiation factor eIF-2B subunit beta isoform X2 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_193.1_10415.t1 | gi|568979309|ref|XP_006515765.1| | PREDICTED: translation initiation factor eIF-2B subunit beta isoform X1 [Mus musculus] | 0.0 |
| pfu_aug2.0_193.1_10415.t1 | gi|641755111|ref|XP_008162903.1| | PREDICTED: translation initiation factor eIF-2B subunit beta isoform X1 [Chrysemys picta bellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_193.1_10415.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_193.1_10415.t1 atggacattgtaaggaaagagggaaagagaatgatgattgctcagtcttcagagacctcgaaattacttctagctgaagg acaagttgatgactacaacagaaatgttccaagtctaaaggtatcggtgattgaggctgtaaatgaactaaaaatagaat tggaaacaagtgctgacagcatagcaggccaggctttagaacatatccatgccaatgaagtgatactaacagcaggcaaa tcaaaaacagttgaagctttccttaagaaagctgcaaagaaaaggaaattccaagtgatcgttgtagaaagtgctccatt ttatcagcttatagtgtgtgctgccatgttcaagctctcccccaagtacctgtgttcatatgatcaggatgccttcaata agtttgtgagtccacaagatgtgatggatttttctgagggggaaattctctccaaagtacaaatagacagccctgtcttt gactatgtccctccagaactggtcactctctatgtgtcaaatataggtgggaatgcaccatcatacgtgtacagacttct cagtgaactctaccacccagaggatcatgatctgggatctaactcaattaaatag |
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Protein
| Protein ID | pfu_aug2.0_193.1_10415.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_193.1_10415.t1 MDIVRKEGKRMMIAQSSETSKLLLAEGQVDDYNRNVPSLKVSVIEAVNELKIELETSADSIAGQALEHIHANEVILTAGK SKTVEAFLKKAAKKRKFQVIVVESAPFYQLIVCAAMFKLSPKYLCSYDQDAFNKFVSPQDVMDFSEGEILSKVQIDSPVF DYVPPELVTLYVSNIGGNAPSYVYRLLSELYHPEDHDLGSNSIK |
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