Gene
| Gene Model ID | pfu_aug2.0_194.1_13771 |
|---|---|
| Locus | scaffold194.1 : 252325 ... 279366 : + |
| To GenomeBrowser | scaffold194.1:252325..279366 |
| Genes list of scaffold | scaffold194.1 |
| Synonym | pfu_aug1.0_4323.1_44914 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| calcium-activated potassium channel subunit alpha- partial | GO:0016020 GO:0060072 GO:0071805 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_194.1_13771.t1 | 2 | 1 | Ion_trans_2 | 12 | 81 | 3.7e-11 | 42.5 | 9.9e-15 | 3.7e-11 | 42.5 |
| pfu_aug2.0_194.1_13771.t1 | 1 | 1 | BK_channel_a | 266 | 309 | 1.9e-13 | 50.1 | 1.0e-16 | 3.7e-13 | 49.2 |
| pfu_aug2.0_194.1_13771.t1 | 2 | 2 | Ion_trans_2 | 303 | 314 | 3.7e-11 | 42.5 | 1.3 | 4900.0 | -2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_194.1_13771.t1 | gi|312095755|ref|XP_003148457.1| | large conductance calcium-activated potassium channel alpha subunit ai [Loa loa] | 0.0 |
| pfu_aug2.0_194.1_13771.t1 | gi|698398851|ref|XP_009808262.1| | PREDICTED: calcium-activated potassium channel subunit alpha-1, partial [Gavia stellata] | 0.0 |
| pfu_aug2.0_194.1_13771.t1 | gi|704313518|ref|XP_010166733.1| | PREDICTED: calcium-activated potassium channel subunit alpha-1, partial [Caprimulgus carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_194.1_13771.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_194.1_13771.t1 atgatcaggttatcacaacttttagttttcttcatcagtttgtggctggcatccgcaggatttctacatttgattgagaa cacaggggacccatggctgagtgtttctaacaaacaagagctgtcgtattgggaaatactctactttctgttggttacca tgtcaacggtcggctacggagatatatacgccacaacagtcctcggaagaattttcattgtagtttttatagtgtcatca attatgtggcaggaacaggtatcgtgcccagatagctcagttggtaagagcgtctgccctgatagcagagggtctcaggg tatgttcaccaatgctttaccggagattgcagagattctaggaagccgtcagaagtatggtggatcttataagaaggaaa gaggcaaaaaacatatagtggtatgtggtcatataacatacgactccgtgtccaactttctgaaggattttctacacaaa gatagagaagatattgatgtggaaattgtgttcattcacaagacattgccagatttagagttggaaggattgctaaagag acactttacacaggtagaattttttcaaggtacagttatggacaccaaggacctcgtcagggtaaagatagacatggcag acgcctgccttgtattagcaaacaagtattgcgaggacccagaccaggaggatgcggcaaacatcatgcgagtcatctct ataaaaaactatcatgctgatattaaagtgattatacagttaatgcagtatcacaataaggcatatcttctgaacattcc aagctgggattggaagcgcggtgatgatgccgtctgcgtggcggaactcaaactgggctttatagctcagagttgtttgg cccctggcttctccacactaatggctaatctcttcactatgagggcattctattattgtaaaagctgtcataacacaatc actgacgtaagagctatcaaaaagtgccgatgcagacctcctgccaatcctttaatgggtaaaaaagacagaccaccaac ggcagggaaggagaaagaaaaaccggctaaaaccagtatcagtggaggtggatccgaaaaaatatcagcggcagggccga caagtccaagtaaagggagcctccctcccattgataaggatggtgctgttgccccacccaaagactcgagtgtagcccca ggggacgagcccaggaaatttgactcaacaggaatgttccactggtgcccacccagggatctgttaactgatgcagtcat ggtatgtgggttataa |
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Protein
| Protein ID | pfu_aug2.0_194.1_13771.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_194.1_13771.t1 MIRLSQLLVFFISLWLASAGFLHLIENTGDPWLSVSNKQELSYWEILYFLLVTMSTVGYGDIYATTVLGRIFIVVFIVSS IMWQEQVSCPDSSVGKSVCPDSRGSQGMFTNALPEIAEILGSRQKYGGSYKKERGKKHIVVCGHITYDSVSNFLKDFLHK DREDIDVEIVFIHKTLPDLELEGLLKRHFTQVEFFQGTVMDTKDLVRVKIDMADACLVLANKYCEDPDQEDAANIMRVIS IKNYHADIKVIIQLMQYHNKAYLLNIPSWDWKRGDDAVCVAELKLGFIAQSCLAPGFSTLMANLFTMRAFYYCKSCHNTI TDVRAIKKCRCRPPANPLMGKKDRPPTAGKEKEKPAKTSISGGGSEKISAAGPTSPSKGSLPPIDKDGAVAPPKDSSVAP GDEPRKFDSTGMFHWCPPRDLLTDAVMVCGL |
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