Gene
| Gene Model ID | pfu_aug2.0_194.1_13776 |
|---|---|
| Locus | scaffold194.1 : 346946 ... 359620 : + |
| To GenomeBrowser | scaffold194.1:346946..359620 |
| Genes list of scaffold | scaffold194.1 |
| Synonym | pfu_aug1.0_2703.1_01205 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pdz domain-containing protein gipc1-like | GO:0001736 GO:0001965 GO:0008340 GO:0009966 GO:0016055 GO:0031982 GO:0031987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_194.1_13776.t1 | 1 | 1 | PDZ | 142 | 213 | 3.3e-08 | 33.5 | 1.9e-11 | 7.0e-08 | 32.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_194.1_13776.t1 | gi|524870168|ref|XP_005091870.1| | PREDICTED: PDZ domain-containing protein GIPC1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_194.1_13776.t1 | gi|676464018|ref|XP_009056787.1| | hypothetical protein LOTGIDRAFT_120670 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_194.1_13776.t1 | gi|391347472|ref|XP_003747985.1| | PREDICTED: LOW QUALITY PROTEIN: PDZ domain-containing protein GIPC1-like [Metaseiulus occidentalis] | 0.0 |
| pfu_aug2.0_194.1_13776.t1 | gi|240976406|ref|XP_002402384.1| | rgs-gaip interacting protein gipc, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_194.1_13776.t1 | gi|662188714|ref|XP_008488045.1| | PREDICTED: PDZ domain-containing protein GIPC3 [Diaphorina citri] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_194.1_13776.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_194.1_13776.t1 atgcataaattgtttggtaagaagaataaaagcaaagacaatttggtagaaagccagtataattcgacaggtaatgatgg accccgcccagcggagacgaacagtatgccggattctaacggaaccgcacatcaacaaaatgtggtacagaaaaacgaaa caccaccgccacaaccaccccgtccaaaactagtctttcattgtcaacaagcacatggaagtccaacgggtataatttct gggtttacaaatgtgaaggagttgtaccagaaaatagcagactgctatgatttaactgtcggtgaaatcctattttgcac actgaatacccacaaagtagatatgtcccgtctgttgggtggtcagattggattagaagattttatcttcgctcacgtga aaggacaacccaaagaacttgatgtgacaaaatcacaggacgctttaggtcttacgataacggacaatggtgcaggctac gcttttataaaacgtattaaagaggacagtataatggacaaacaacagctagtgtctgtgggtgatcatatagagaagat agacggaaaaagtctcgtgggatgtcggcattacgaagttgcaaaaatgttaaaggatataccaaaaggaacaacattca ctctgagattggtcgaaccaatgaaatcaggtttttcatttgtggagaaatcctctgggaaaaagggaagcggcaattta gggtcaggaaaacaaacattgcggttacgatcgtcgggacctgccacagtagaaattccggatgatgtagtgaatgtagc agttgataagataaatggattgttggagtccttcatgggaatcaatgacacagagttagcacaaagtatctgggagttgg gcagcaaactggacaacccaagcgattttgccatgaaggtcgacaattcggacttgaacgaatttggctttacagatgat tttgtattcgatctatggggagccataaccgatgcaaaaagcggaagactaacaaaagcaacaacagaatttaacgagca gttttag |
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Protein
| Protein ID | pfu_aug2.0_194.1_13776.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_194.1_13776.t1 MHKLFGKKNKSKDNLVESQYNSTGNDGPRPAETNSMPDSNGTAHQQNVVQKNETPPPQPPRPKLVFHCQQAHGSPTGIIS GFTNVKELYQKIADCYDLTVGEILFCTLNTHKVDMSRLLGGQIGLEDFIFAHVKGQPKELDVTKSQDALGLTITDNGAGY AFIKRIKEDSIMDKQQLVSVGDHIEKIDGKSLVGCRHYEVAKMLKDIPKGTTFTLRLVEPMKSGFSFVEKSSGKKGSGNL GSGKQTLRLRSSGPATVEIPDDVVNVAVDKINGLLESFMGINDTELAQSIWELGSKLDNPSDFAMKVDNSDLNEFGFTDD FVFDLWGAITDAKSGRLTKATTEFNEQF |
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