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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_194.1_13776
Locus scaffold194.1 : 346946 ... 359620 : +
To GenomeBrowser scaffold194.1:346946..359620
Genes list of scaffold scaffold194.1
Synonym pfu_aug1.0_2703.1_01205

Manual annotation
Annotation by Blast2GO
Annotation GO
pdz domain-containing protein gipc1-like GO:0001736 GO:0001965 GO:0008340 GO:0009966 GO:0016055 GO:0031982 GO:0031987

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_194.1_13776.t1 1 1 PDZ 142 213 3.3e-08 33.5 1.9e-11 7.0e-08 32.5

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_194.1_13776.t1 gi|524870168|ref|XP_005091870.1| PREDICTED: PDZ domain-containing protein GIPC1-like [Aplysia californica] 0.0
pfu_aug2.0_194.1_13776.t1 gi|676464018|ref|XP_009056787.1| hypothetical protein LOTGIDRAFT_120670 [Lottia gigantea] 0.0
pfu_aug2.0_194.1_13776.t1 gi|391347472|ref|XP_003747985.1| PREDICTED: LOW QUALITY PROTEIN: PDZ domain-containing protein GIPC1-like [Metaseiulus occidentalis] 0.0
pfu_aug2.0_194.1_13776.t1 gi|240976406|ref|XP_002402384.1| rgs-gaip interacting protein gipc, putative [Ixodes scapularis] 0.0
pfu_aug2.0_194.1_13776.t1 gi|662188714|ref|XP_008488045.1| PREDICTED: PDZ domain-containing protein GIPC3 [Diaphorina citri] 0.0

Transcript
Transcript IDpfu_aug2.0_194.1_13776.t1
Definition-
>pfu_aug2.0_194.1_13776.t1
atgcataaattgtttggtaagaagaataaaagcaaagacaatttggtagaaagccagtataattcgacaggtaatgatgg
accccgcccagcggagacgaacagtatgccggattctaacggaaccgcacatcaacaaaatgtggtacagaaaaacgaaa
caccaccgccacaaccaccccgtccaaaactagtctttcattgtcaacaagcacatggaagtccaacgggtataatttct
gggtttacaaatgtgaaggagttgtaccagaaaatagcagactgctatgatttaactgtcggtgaaatcctattttgcac
actgaatacccacaaagtagatatgtcccgtctgttgggtggtcagattggattagaagattttatcttcgctcacgtga
aaggacaacccaaagaacttgatgtgacaaaatcacaggacgctttaggtcttacgataacggacaatggtgcaggctac
gcttttataaaacgtattaaagaggacagtataatggacaaacaacagctagtgtctgtgggtgatcatatagagaagat
agacggaaaaagtctcgtgggatgtcggcattacgaagttgcaaaaatgttaaaggatataccaaaaggaacaacattca
ctctgagattggtcgaaccaatgaaatcaggtttttcatttgtggagaaatcctctgggaaaaagggaagcggcaattta
gggtcaggaaaacaaacattgcggttacgatcgtcgggacctgccacagtagaaattccggatgatgtagtgaatgtagc
agttgataagataaatggattgttggagtccttcatgggaatcaatgacacagagttagcacaaagtatctgggagttgg
gcagcaaactggacaacccaagcgattttgccatgaaggtcgacaattcggacttgaacgaatttggctttacagatgat
tttgtattcgatctatggggagccataaccgatgcaaaaagcggaagactaacaaaagcaacaacagaatttaacgagca
gttttag

Protein
Protein IDpfu_aug2.0_194.1_13776.t1
Definition-
>pfu_aug2.0_194.1_13776.t1
MHKLFGKKNKSKDNLVESQYNSTGNDGPRPAETNSMPDSNGTAHQQNVVQKNETPPPQPPRPKLVFHCQQAHGSPTGIIS
GFTNVKELYQKIADCYDLTVGEILFCTLNTHKVDMSRLLGGQIGLEDFIFAHVKGQPKELDVTKSQDALGLTITDNGAGY
AFIKRIKEDSIMDKQQLVSVGDHIEKIDGKSLVGCRHYEVAKMLKDIPKGTTFTLRLVEPMKSGFSFVEKSSGKKGSGNL
GSGKQTLRLRSSGPATVEIPDDVVNVAVDKINGLLESFMGINDTELAQSIWELGSKLDNPSDFAMKVDNSDLNEFGFTDD
FVFDLWGAITDAKSGRLTKATTEFNEQF

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