Gene
| Gene Model ID | pfu_aug2.0_194.1_13777 |
|---|---|
| Locus | scaffold194.1 : 365127 ... 387035 : - |
| To GenomeBrowser | scaffold194.1:365127..387035 |
| Genes list of scaffold | scaffold194.1 |
| Synonym | pfu_aug1.0_2703.1_01206 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| phenylalanine--trna ligase alpha subunit | GO:0000049 GO:0004826 GO:0005524 GO:0005737 GO:0006432 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_194.1_13777.t1 | 2 | 1 | tRNA-synt_2b | 175 | 220 | 3.0e-07 | 30.1 | 0.51 | 1500.0 | -1.4 |
| pfu_aug2.0_194.1_13777.t1 | 1 | 1 | tRNA-synt_2d | 187 | 460 | 0.0 | 302.5 | 0.0 | 0.0 | 301.8 |
| pfu_aug2.0_194.1_13777.t1 | 2 | 1 | tRNA-synt_2 | 206 | 225 | 2.6e-07 | 29.7 | 0.5 | 1500.0 | -2.4 |
| pfu_aug2.0_194.1_13777.t1 | 2 | 2 | tRNA-synt_2b | 293 | 383 | 3.0e-07 | 30.1 | 4.1e-10 | 1.2e-06 | 28.2 |
| pfu_aug2.0_194.1_13777.t1 | 2 | 2 | tRNA-synt_2 | 326 | 407 | 2.6e-07 | 29.7 | 2.7e-10 | 7.9e-07 | 28.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_194.1_13777.t1 | gi|676430616|ref|XP_009045985.1| | hypothetical protein LOTGIDRAFT_207611 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_194.1_13777.t1 | gi|524887832|ref|XP_005100499.1| | PREDICTED: phenylalanine--tRNA ligase alpha subunit-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_194.1_13777.t1 | gi|390334736|ref|XP_786462.3| | PREDICTED: phenylalanine--tRNA ligase alpha subunit [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_194.1_13777.t1 | gi|617481881|ref|XP_007576573.1| | PREDICTED: phenylalanine--tRNA ligase alpha subunit [Poecilia formosa] | 0.0 |
| pfu_aug2.0_194.1_13777.t1 | gi|658861643|ref|XP_008413587.1| | PREDICTED: phenylalanine--tRNA ligase alpha subunit [Poecilia reticulata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_194.1_13777.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_194.1_13777.t1 atgatcacaatgaccttgacctttaaccctagtatgaccttggagaccttgtctgaaagcccacatcctgcaaaaatcat aaagacagaacaagtcaccaacaaacattgggagcttacagaggaggggaaggatgtggcgaagaatggtagttacgaag ccagggtgtttaacgctatacctgctgggggaattgcacaggcagaaatcatgaaatcagtcccaaatgccaaagttggt ttcagcaaagccatgcaggctggttggattgtactagacaaaagttcagaaggtggccctaaagtgcagaggaaggttga aaatattgaagattctgttcaacaatgtgtatctcaatttgcgacaatggatctcagtggaatcacagatgcacaaaaag cagaatacaagaaacgaaaacttgtcacagaagtgaaagttgttagttaccgaataagtaagggagagaacttcacatta acaatcagcaaaccagaagtagatcttacaacaaaaatgattcagagtggatcatggagaacaaaaactttcaaggagta taactttgatgcgttaggggtccctccccaagctggtcatcttcatcctctactgaaagtcagggctgaatatagacaga tcttcttagaaatgggattcacagagatgcctaccaatagattcgtagagagttgtttctggaatttcgatgctttgttc caacctcagcaacatccggcccgtgatgctcatgatactttcttcatctcagaacctcaaaaagctggtggctttcccat ggaatatttggaaagagtgaagaagatccattctgaagggggatatggctcacaagggtacaaaatggattggaagatag aggaagcagaaaagaacatacttagaactcacacaacggccattagtgcacggatgttatatcaacttgctcaagagaaa gagttcagacctgtcaagtatttctccatagacagagtattcagaaacgaaaatgtcgatgatacacatttagcggagtt ccaccagatcgaaggagtagtggccgactatggacttaccctaggagacttgatgggcgtcattaatgaatttttcaaga aattaggaatagaaaaattacgtttcaaacctgcatacaatccatatactgaacccagcatggaaatcttcagttaccat gatggtttgaagaaatgggtcgagattggcaattctgggattttcagacctgaaatgttgatacccatgggacttccaaa agatgtatccgtaatcgcatggggattgtccttagaaagaccaacaatgataaagtataaaatagacaatataaggacat taatgggaccaagagtcgatttgaaaatggtgtacaacaatccactgtgtcggcttgataagtga |
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Protein
| Protein ID | pfu_aug2.0_194.1_13777.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_194.1_13777.t1 MITMTLTFNPSMTLETLSESPHPAKIIKTEQVTNKHWELTEEGKDVAKNGSYEARVFNAIPAGGIAQAEIMKSVPNAKVG FSKAMQAGWIVLDKSSEGGPKVQRKVENIEDSVQQCVSQFATMDLSGITDAQKAEYKKRKLVTEVKVVSYRISKGENFTL TISKPEVDLTTKMIQSGSWRTKTFKEYNFDALGVPPQAGHLHPLLKVRAEYRQIFLEMGFTEMPTNRFVESCFWNFDALF QPQQHPARDAHDTFFISEPQKAGGFPMEYLERVKKIHSEGGYGSQGYKMDWKIEEAEKNILRTHTTAISARMLYQLAQEK EFRPVKYFSIDRVFRNENVDDTHLAEFHQIEGVVADYGLTLGDLMGVINEFFKKLGIEKLRFKPAYNPYTEPSMEIFSYH DGLKKWVEIGNSGIFRPEMLIPMGLPKDVSVIAWGLSLERPTMIKYKIDNIRTLMGPRVDLKMVYNNPLCRLDK |
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