Gene
| Gene Model ID | pfu_aug2.0_194.1_13778 |
|---|---|
| Locus | scaffold194.1 : 388992 ... 407255 : - |
| To GenomeBrowser | scaffold194.1:388992..407255 |
| Genes list of scaffold | scaffold194.1 |
| Synonym | pfu_aug1.0_44903.1_27085 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| diencephalon mesencephalon homeobox protein 1 isoform x2 | GO:0007399 GO:0044763 GO:0048513 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_194.1_13778.t1 | 2 | 1 | Homeobox | 54 | 65 | 2.4e-21 | 75.0 | 0.16 | 790.0 | -0.3 |
| pfu_aug2.0_194.1_13778.t1 | 2 | 2 | Homeobox | 114 | 170 | 2.4e-21 | 75.0 | 1.6e-24 | 8.1e-21 | 73.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_194.1_13778.t1 | gi|62955219|ref|NP_001017625.1| | diencephalon/mesencephalon homeobox protein 1-B [Danio rerio] | 0.0 |
| pfu_aug2.0_194.1_13778.t1 | gi|632940281|ref|XP_007885234.1| | PREDICTED: diencephalon/mesencephalon homeobox protein 1 isoform X2 [Callorhinchus milii] | 8.40779e-45 |
| pfu_aug2.0_194.1_13778.t1 | gi|663251604|ref|XP_008488984.1| | PREDICTED: diencephalon/mesencephalon homeobox protein 1 isoform X2 [Calypte anna] | 1.96182e-44 |
| pfu_aug2.0_194.1_13778.t1 | gi|701433750|ref|XP_010004845.1| | PREDICTED: diencephalon/mesencephalon homeobox protein 1 isoform X2 [Chaetura pelagica] | 1.96182e-44 |
| pfu_aug2.0_194.1_13778.t1 | gi|698448343|ref|XP_009818389.1| | PREDICTED: diencephalon/mesencephalon homeobox protein 1 isoform X2 [Gavia stellata] | 2.94273e-44 |
Transcript
| Transcript ID | pfu_aug2.0_194.1_13778.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_194.1_13778.t1 atgagaaaatcagaaaccgaaggcatacaaaatcaggataaaacaggaaccaaggcaaacaaacaaaactctcctccata tgaaaagaagcgaactcccgatatgggagtgagaccagttgcccgggaagaaaagaaaaaaaatgcagcacctacccggc ttttccttgacctctcatccgtccatatttggtttgtcatccacaattcctccagctttaggaaatggacaacttattcc tggtcattccggttccctcctgtacatccattttcgtttgctgaaaaattagcagctgatctgctacttgaagccaggtt tggtgcacacagaaaacagcgtcgtagtagaacggctttcacaaaccaacaactggccgctctagaaaagacattttcaa aaactcattacccggatgttgtaatgcgtgaaagacttgcgctgatgacaaatttaccagaggcaaggattcaggtctgg tttaaaaatcgaagagcaaaattcagaaagaagcagaaatcacttaagccctgtaaggatcaatctgccgagactacagt gacagaaagcaacggtcaaaagactaaagagaaaactgacgatgaagttgtagatgttgtcgatgtagacggaagtgaca tcaataatgtggggtcaggtgatctggatacacaagaagaacaagatagtgtccctaaagatacgagcaaaaatgtttct tttgatcagtcgccttcgtccccatgtgacagtattactgatgataatgacttgatgggacaaacaagaacattgcctcc ctttagtgtatttaactggcacagccaaagttttgccaatgccgtgcttcaaagacaatttaacctgcaaaaccaaacgg tcccggctgctttccatattccgtccaatcactcggcattgccatccctatacttcggaaattccctaccatgttccagt tctttgttctctccgtccacatgttttccgaatcgtctattttccgggaccgttgacaaggactcgcccatggcatcaag cattgacagtcttagatacagagcaaaacagcattccgcaacaatgggcctctttgaaagaatgtga |
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Protein
| Protein ID | pfu_aug2.0_194.1_13778.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_194.1_13778.t1 MRKSETEGIQNQDKTGTKANKQNSPPYEKKRTPDMGVRPVAREEKKKNAAPTRLFLDLSSVHIWFVIHNSSSFRKWTTYS WSFRFPPVHPFSFAEKLAADLLLEARFGAHRKQRRSRTAFTNQQLAALEKTFSKTHYPDVVMRERLALMTNLPEARIQVW FKNRRAKFRKKQKSLKPCKDQSAETTVTESNGQKTKEKTDDEVVDVVDVDGSDINNVGSGDLDTQEEQDSVPKDTSKNVS FDQSPSSPCDSITDDNDLMGQTRTLPPFSVFNWHSQSFANAVLQRQFNLQNQTVPAAFHIPSNHSALPSLYFGNSLPCSS SLFSPSTCFPNRLFSGTVDKDSPMASSIDSLRYRAKQHSATMGLFERM |
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