Gene
| Gene Model ID | pfu_aug2.0_1946.1_21861 |
|---|---|
| Locus | scaffold1946.1 : 1 ... 7355 : - |
| To GenomeBrowser | scaffold1946.1:1..7355 |
| Genes list of scaffold | scaffold1946.1 |
| Synonym | pfu_aug1.0_17.1_14696 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1946.1_21861.t1 | 2 | 1 | Laminin_G_2 | 52 | 164 | 2.6e-38 | 130.9 | 1.5e-19 | 7.3e-16 | 58.3 |
| pfu_aug2.0_1946.1_21861.t1 | 2 | 1 | Laminin_G_1 | 52 | 166 | 1.2e-32 | 112.6 | 1.5e-17 | 7.3e-14 | 51.9 |
| pfu_aug2.0_1946.1_21861.t1 | 2 | 1 | Laminin_G_3 | 62 | 162 | 1.1e-11 | 45.2 | 7.2e-07 | 0.0036 | 17.5 |
| pfu_aug2.0_1946.1_21861.t1 | 2 | 2 | Laminin_G_3 | 200 | 327 | 1.1e-11 | 45.2 | 2.1e-10 | 1.0e-06 | 29.0 |
| pfu_aug2.0_1946.1_21861.t1 | 2 | 2 | Laminin_G_2 | 231 | 360 | 2.6e-38 | 130.9 | 2.3e-24 | 1.2e-20 | 73.8 |
| pfu_aug2.0_1946.1_21861.t1 | 2 | 2 | Laminin_G_1 | 245 | 362 | 1.2e-32 | 112.6 | 1.5e-19 | 7.5e-16 | 58.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1946.1_21861.t1 | gi|557012978|ref|XP_006007039.1| | PREDICTED: chondroitin sulfate proteoglycan 4-like isoform X2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1946.1_21861.t1 | gi|557012976|ref|XP_006007038.1| | PREDICTED: chondroitin sulfate proteoglycan 4-like isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1946.1_21861.t1 | gi|557012980|ref|XP_006007040.1| | PREDICTED: chondroitin sulfate proteoglycan 4-like isoform X3 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1946.1_21861.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1946.1_21861.t1 atgcaagaactcaaggtcctctaccaattagaaaattgccatcttgcgtttgtactcatatcattattatttatttcagc ttccttctatggcgacagtagcgttagattgccttttgacgatagtacaccattgattcgtctagagctccgttttctga cttcccgccctgatgggctgctctttatggccaaaggacaaacggactggctattgctgagaatgacctccggacagctg atgttacagggggacttcggatcaggatcttggcttgtcacctcagacccgggccctggtctggacgatctgacttggca tcacgtggttatatcacaaagcggtaagaccatggctctcagtgtggacactaggacttacaacggctcgctccccgggg gtatgacccaacttaatgagaacgaggtattggtagggggattcgggaactggaagaacttccgcgggtgtataactaac gtgattttcaatagatacaacatcctcaatcatgcacagcagttgaataattcggatttagtgaagcatgtaacatggga ctgcagtgaagaattcacagctccgtcaaatgaacccatctatttcaaagacgatcagtcctacctggctttacctggct tgacaataaccacaaccgggtctctgtactttgacgtcaaaactttatctcaaactacgtttttagttattagtttatcg acaaatctgacttattccgatgttttggcaatagaactcataaatggaaaaataaaacttaccgttaaccgagggggagg ggacacctttatacgatctgccgttaccgttaacgacaaccaatggcataacgttggtgttacgtttgagtcacagcgcg tcattctaactgttgatactgaaagacaacaaagcgcttttcatcgaaacagcaataacttcttcagattcgcagacaaa ttttatattgggggtttaacgaatgacatcaggcaccatatttcaaaccaaaatttgctcgccgactcgaggataaccgg aaactttagaggatgtgtcagaagtgtcaatgtcgagggaaacgatttagggttcaaagacgtagaggtcagcaatgaga tagaggtaggatgcaagacggggcaagtcgaaattgctccaaataatggtggaaccggtcacgtggatgaaagctcaaac cgcgaacgcccgttagtaagtgttgttcctctcagggctcgggagggagaggaagtgacattaacaggaagtgttatccg tgtagtgtttgattatcgggcatatagaatacggcagtccgccatacaatttcgtatcacacagccgccagatcacggca gtatcgagatcgacagaagacgtagtaatgacgcgttcacgcttttagatcttatcggaaggaaagtgaaatacgcacac gacgggagtgaaaccgtaagtgacgaagttgccatggagatggttattgtttccggtagcgacagcgttccagaaaaact cacgcaaacatacgcatttgtattgcctgtggtaatctcccccgtaaacgatcccccgattctgtatttgctcaacaaga catcaacaacaacacgcattgacatagccaaagaatccaaaatagaaatcaatacaaatattcttaatctagatgatccc gacacatcagctttaaactctgtattcagtgtcaaatgcaactctacatcaggggtcgcgggtcatatggaagtacaggg acaacctgtagattccttcacatttcaacaagttctggacgatcttaaacttactctaatgaaaaagacaggaatccgtc ttgtccatggcagtttctctttgatacaaccagaaaaccttactgtaagcacgaatctaccataccagaatttagatatt cagtacgtaattagcagaaatcctagatatggagaaattcagaaaaatgacaacggcatatggacaactatcacacgatt tacacaggaagacatagagaagggaaatattcggtatacgaattccagatctgttcattccactccgtacgaccagtttt cattcacagttagatgtttgaccaaatcgcttgaccagactccgttcttcattcaaatagaaagacaagctttaaatgtg aattttgcaaggtctataaatctgtcaaggaaggattacaaagtactcagtaaagctgaacttcatgctcaaacaaacga caaaatgacgtcagacgttcagataaggtttatgatactcagacctcccgtttatggaagtatctaccgagttcataaaa cgaaagcggacccggacttactgtcagatctacaacctttacagcgtgacgaacacttcacacaggatgacgtaaataac ggctacgtcatctacaaattgaagagttcaacatcgagacggacgggagacttcgttgatctgagtgtagaatccggttc cgctgttccgaaaaggataagaatttactttgattacactccccctgtctctgcggtacgattcacaaacaatggactga agactgttatagagggccgacagcgtactatagaaaggtccgatctatacttggaaacaaatgattactctgaatttgaa tttgatgtcattgatttcccggagcacggagaactacaattggtcattcctagaacttcacatgtagaaagtcgtaatgt atcaaagttcacaaaccaagatatccgtaatttaaagttagtgtacgaacatgatgattccgagagtgatactgatcgtt ttactttcatagcgtcaccgatacttcagagtacggacgtgcttccgttaaaagtacaggaattcagcggcacatttcaa ataaaaatcattatgaggaatgataacgcacccaggagacccgtggacaagattttccatgttgttacaaatcaggaaaa agttatcaccctggacgacctgtcgtgtacagatccggatatcaacttcgaccctatgaacctgctgtacacggtgggaa gagttaggaatggggatatcatcaataatgttaacaagagcgtcgttactcgtttcacgcaaaaagatattgctgatgga aaaataacatttagacatcgtggggccagggttggacgcattccatgttatgtcggcgacggtcaatataacacccagtt cgtatttgaagtagaagccaccaatccctacttgagaatcgtaaataacactggcgtcgccgtcaaagcgtcacagagcg tctttatcaccggtaacaatctaagcattgaaacaaacatgaatacggaaccaaaggacattcgctttattttagttcaa gaaccgctgtatggaaatcttgaactgatcggcgccaaggtaacagaattttctctccagataatcatggatggtgtatt atcatatcgtcaccggggacaggggggtaatgaggatgtctttagatttgctgtttttgcaggacaggcaagggcgcagt catcttttgtcatacacatatttcaaacaacccaaaatgttccacctcgaatcgttcacaactccattttagaagtaccc gagctaggcttttctactttgacaaccaataatctacaggtgacacacccaaatagtcccccatcctccatcatttacac tgtaacagctcctcccagtcacggacggctgcgggtacagggtagataccaccgtcagggggaccacgcccatcagacat tcacacaggagaacattgatcaaggtcatatcagctatcaccactcagactttaacccgtctgcagattcttttgtgttt gatgttacaaacggtatgcagactttgaaggggttacagtttgctattgaaataattcctacaaggttagaattggaaat tcagaacttcacagtgcaagaaggaatgagaaaagccctgactaagaacaacataaggctgaagtcacgttactatgaca gtaagacaatcacatttacggtagtcaaacagcctggtcatggatggctggaggaggctggccggaggggacagagactg accaccttcacttttgctcagctatctcaaggagggtatactaccttcatgataacaggttgtgagtcgttatcagacag ctttacagtgaggggccgtgtagaggaggagggtaaggacagtagggagggagtggtatatgtttccatacagaccatta atgaccagtcaccaactgtggtcatcaacaggcagttaaaaatgtggagatcatctctagcgcttattacaaaggaacac ctgagggctgatgactctgattcatccccgacagagataacttaccaggtgctcagtacaaccaatgggagggttgcctt tgtcaataacgcctttaggagtatccaatcatttaatcaggaacaggtcaacaggaaccaggttgtctttgtacatgatg |
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Protein
| Protein ID | pfu_aug2.0_1946.1_21861.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1946.1_21861.t1 MQELKVLYQLENCHLAFVLISLLFISASFYGDSSVRLPFDDSTPLIRLELRFLTSRPDGLLFMAKGQTDWLLLRMTSGQL MLQGDFGSGSWLVTSDPGPGLDDLTWHHVVISQSGKTMALSVDTRTYNGSLPGGMTQLNENEVLVGGFGNWKNFRGCITN VIFNRYNILNHAQQLNNSDLVKHVTWDCSEEFTAPSNEPIYFKDDQSYLALPGLTITTTGSLYFDVKTLSQTTFLVISLS TNLTYSDVLAIELINGKIKLTVNRGGGDTFIRSAVTVNDNQWHNVGVTFESQRVILTVDTERQQSAFHRNSNNFFRFADK FYIGGLTNDIRHHISNQNLLADSRITGNFRGCVRSVNVEGNDLGFKDVEVSNEIEVGCKTGQVEIAPNNGGTGHVDESSN RERPLVSVVPLRAREGEEVTLTGSVIRVVFDYRAYRIRQSAIQFRITQPPDHGSIEIDRRRSNDAFTLLDLIGRKVKYAH DGSETVSDEVAMEMVIVSGSDSVPEKLTQTYAFVLPVVISPVNDPPILYLLNKTSTTTRIDIAKESKIEINTNILNLDDP DTSALNSVFSVKCNSTSGVAGHMEVQGQPVDSFTFQQVLDDLKLTLMKKTGIRLVHGSFSLIQPENLTVSTNLPYQNLDI QYVISRNPRYGEIQKNDNGIWTTITRFTQEDIEKGNIRYTNSRSVHSTPYDQFSFTVRCLTKSLDQTPFFIQIERQALNV NFARSINLSRKDYKVLSKAELHAQTNDKMTSDVQIRFMILRPPVYGSIYRVHKTKADPDLLSDLQPLQRDEHFTQDDVNN GYVIYKLKSSTSRRTGDFVDLSVESGSAVPKRIRIYFDYTPPVSAVRFTNNGLKTVIEGRQRTIERSDLYLETNDYSEFE FDVIDFPEHGELQLVIPRTSHVESRNVSKFTNQDIRNLKLVYEHDDSESDTDRFTFIASPILQSTDVLPLKVQEFSGTFQ IKIIMRNDNAPRRPVDKIFHVVTNQEKVITLDDLSCTDPDINFDPMNLLYTVGRVRNGDIINNVNKSVVTRFTQKDIADG KITFRHRGARVGRIPCYVGDGQYNTQFVFEVEATNPYLRIVNNTGVAVKASQSVFITGNNLSIETNMNTEPKDIRFILVQ EPLYGNLELIGAKVTEFSLQIIMDGVLSYRHRGQGGNEDVFRFAVFAGQARAQSSFVIHIFQTTQNVPPRIVHNSILEVP ELGFSTLTTNNLQVTHPNSPPSSIIYTVTAPPSHGRLRVQGRYHRQGDHAHQTFTQENIDQGHISYHHSDFNPSADSFVF DVTNGMQTLKGLQFAIEIIPTRLELEIQNFTVQEGMRKALTKNNIRLKSRYYDSKTITFTVVKQPGHGWLEEAGRRGQRL TTFTFAQLSQGGYTTFMITGCESLSDSFTVRGRVEEEGKDSREGVVYVSIQTINDQSPTVVINRQLKMWRSSLALITKEH LRADDSDSSPTEITYQVLSTTNGRVAFVNNAFRSIQSFNQEQVNRNQVVFVHD |
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