Gene
| Gene Model ID | pfu_aug2.0_1946.1_21866 |
|---|---|
| Locus | scaffold1946.1 : 74846 ... 80002 : + |
| To GenomeBrowser | scaffold1946.1:74846..80002 |
| Genes list of scaffold | scaffold1946.1 |
| Synonym | pfu_aug1.0_4930.1_52405 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1946.1_21866.t1 | 2 | 1 | Lectin_C | 21 | 31 | 4.3e-13 | 49.8 | 0.33 | 1600.0 | -0.3 |
| pfu_aug2.0_1946.1_21866.t1 | 2 | 2 | Lectin_C | 41 | 154 | 4.3e-13 | 49.8 | 3.3e-16 | 1.6e-12 | 47.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1946.1_21866.t1 | gi|742245355|ref|XP_010864257.1| | PREDICTED: ladderlectin-like [Esox lucius] | 6.0e-09 |
| pfu_aug2.0_1946.1_21866.t1 | gi|742245347|ref|XP_010864252.1| | PREDICTED: ladderlectin-like [Esox lucius] | 9.0e-09 |
| pfu_aug2.0_1946.1_21866.t1 | gi|260815865|ref|XP_002602693.1| | hypothetical protein BRAFLDRAFT_210423 [Branchiostoma floridae] | 2.0e-08 |
| pfu_aug2.0_1946.1_21866.t1 | gi|548541506|ref|XP_005753276.1| | PREDICTED: lactose-binding lectin l-2-like [Pundamilia nyererei] | 5.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_1946.1_21866.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1946.1_21866.t1 atgaagcccagtattttggctgcagtatgcgtctttgtgacagttgcaacagtcgtacatgtggcagaagccagaaagtt ttgccaaagctaccaggtgatgagatttaatcgaaacgtgcgttcctgggacgacgcacgtagtaggtgtcagcgtctcg gaatggatctgatcaaaattgacaatatggaggaagacttgtttatccagacacttctcaagaacaacccaggaagacgg aaccaggagggatggtggattggtggtattaacagaggaaacggatggaggtggacagacggatcacagatggattatca aagcttccctccaggaaatacccgcagttactcaggaacgaccaattacgctgccattttcaagaatcggggcttttcca cgtcatttgaatggggctacctcacaagccgttcttcaaacaaaatgggagttatttgtgaatcaacaagttgctag |
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Protein
| Protein ID | pfu_aug2.0_1946.1_21866.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1946.1_21866.t1 MKPSILAAVCVFVTVATVVHVAEARKFCQSYQVMRFNRNVRSWDDARSRCQRLGMDLIKIDNMEEDLFIQTLLKNNPGRR NQEGWWIGGINRGNGWRWTDGSQMDYQSFPPGNTRSYSGTTNYAAIFKNRGFSTSFEWGYLTSRSSNKMGVICESTSC |
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