Gene
| Gene Model ID | pfu_aug2.0_1950.1_01919 |
|---|---|
| Locus | scaffold1950.1 : 75771 ... 92295 : - |
| To GenomeBrowser | scaffold1950.1:75771..92295 |
| Genes list of scaffold | scaffold1950.1 |
| Synonym | pfu_aug1.0_4844.1_23669 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1950.1_01919.t1 | 3 | 1 | NACHT | 157 | 180 | 1.1e-09 | 38.1 | 2.5e-05 | 0.074 | 12.7 |
| pfu_aug2.0_1950.1_01919.t1 | 3 | 2 | NACHT | 205 | 330 | 1.1e-09 | 38.1 | 3.3e-08 | 9.9e-05 | 22.0 |
| pfu_aug2.0_1950.1_01919.t1 | 3 | 3 | NACHT | 768 | 830 | 1.1e-09 | 38.1 | 0.44 | 1300.0 | -1.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1950.1_01919.t1 | gi|260818908|ref|XP_002604624.1| | hypothetical protein BRAFLDRAFT_92858 [Branchiostoma floridae] | 4.0e-09 |
| pfu_aug2.0_1950.1_01919.t1 | gi|554820796|ref|XP_005921126.1| | PREDICTED: NACHT, LRR and PYD domains-containing protein 14-like [Haplochromis burtoni] | 2.0e-07 |
| pfu_aug2.0_1950.1_01919.t1 | gi|658837937|ref|XP_008394853.1| | PREDICTED: protein NLRC3-like isoform X2 [Poecilia reticulata] | 8.0e-07 |
| pfu_aug2.0_1950.1_01919.t1 | gi|658837935|ref|XP_008394847.1| | PREDICTED: protein NLRC3-like isoform X1 [Poecilia reticulata] | 1.0e-06 |
| pfu_aug2.0_1950.1_01919.t1 | gi|499031664|ref|XP_004566540.1| | 1.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_1950.1_01919.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1950.1_01919.t1 atggtattttggcgatgctacatgaatatgaaggggtcggcgttagcagagccaatcgttgtcatgaagacgcttctata cactttctacttggattacaacggcagcaacctgaatgacatatgcttggggttcagaaaatatcgagataatggttcag tccaatgtaagaaggatagataccatttaacagattatagtacagttccaagtcagctggaaaaatgtcatatagaagga ttagaagaattgcgaatctttattcgttcagtaaataatgaacaagctgacatacttcgaatttctccaacaaaaggcga tactttagacatacctaatttttttgtacatatgcctatcatagatgaagatggaaatcatatatgcactgatatggatc aacgtaaagttcgatacacaagaattgaaaacattctgtgtgaaaagccagttagtaagcgtttgcaagttgtgtacata ctcggtgaagctggatatggtaaatcgatgatatgtgaaagaattgtgaaattatggtgcgatgcataccgattggaaat taaagagaatgaaaaacttgggtcatcagattctgatgaatcacgatttcttaaaagatttgaatttctcttttttgtca aaatggcttacttaagaaaggatcacacatcccctattagtatgatacaagaattttatggtttgaacagttcgcaaaaa gaaattttaaaggaaattttggaaaaagatctttccacaaatctggttgtactagatgctattgatgaatggaatgtgcc tttaagcaaactgaaagatatgttagaatcatttaggtccatgccgaaatgtaccattttgatttcaatgagatcttgga aattcatggaagttaaagaaatatgtcgtccaaaattcgacagagtgatacgtttgaatggtcttaacaacgacgggatg aaagagcttacaacaaagatactacgcaattataccgagaaaaacactactgatgaaaacgataaagatctacaggactt tgagagaagatccaaacaagttcacgattcaatgtctgcttcaccagttcacctaaggtcattcttaagaatccctttgt taaccatttactgtgctattgcattgtacgaaggtggagaaatggaatcttcatgggcttttttgcagtcttcggtgatt gaaattctattacgaagatattgcaaaactcaacaaagtggaatcgaagaaagtatgcaaactgagacagaatcacgtct ctccgacatattaaggaaacatccatatttagcaaataatatgtcttctttatcatctcttgggaaagttgcatttgaaa atcttacttcaggtggtacatcttcagttatcagggaaaacaagttaaacgaagagctaggcaaagatagtgtagaactt tttcttagaactggaattctgataaaaatacacacatcaagtaggttctatgaggataatatcataatacgtttccttca tagatctgttcaagagttccttgcagcattatatctattcaacagtggaacagaaactgaagtcttaaagtccctcaccg ctgcagtgaaagacattaatgaggcattcaaatggtctaatatcctgatcgttttgtcaggattatcacctatgattggc tgtgtaatatcaaaacatcttaaaaacctagcgaacaaagacgaagatgttctcagttatagatccacattccatggaaa tacctaccagaaggttttgcacctctatggattacaattacggtgctatagtgaaacaaggggctcaaaaacaatcgatg ctttcacagtggatcggagatttaagttttggttttctgatataattctcatggctaatgaaacggatgaacttttcgta agagaatctgctaaagtgcttcaatgccacgcaaacgagatcaaatcattgagcatagtatgcattcccgatgataatat aaacggaataactaatgacgagattaaagcattcttggatagcagttcatctattgaatctttttacatcgatggatatg caaaagggaattgtagactgtttcgtagctatagccagagaatgagttgtttgcgaaccttaggtttagcgaatgttgga tttcataagaatgctctgaccgatttgttaaggacaaatgagtccaaaaaaggaatcaattcgttattacttttatatat taaaccgacagaagatttaagcgatgttaaccaataccatgtatcttcgaataatctaaaaagcgcctcgatctcaaatt gcatggtacctcattcgtatgtgatatcaactgttctacctagaaagcgaccggaaatccctgttttagagaagattata gaaactcttccaagctatcagaatttgacaacgttacatattacatatatggaatctaaagaagacaggcaaatgttgat caaagtttttcccgagctaataaagttggaaacactatcttctttttcatatattggaagttcacagcatcagaacaccg atgacgtatatgacacatcgattgtttcaaatatcatgaagctacgacaacttagagaaatatcattgagtcttattcat ttgaaagaaaacattatcgatatcgcattcaactcaaaaatagaatctgtcgtgctgatcaagtttgaaatgaattcacc cgacgattggatgtcattcttagattcagctaccagcaatagacctgtcaaaaaagttgtgctttgtgacacaaatataa gaagagaagacattgataaatattgcaattctcctgatacccaaatattcgtacacaatcaagactggattaattga |
|
Protein
| Protein ID | pfu_aug2.0_1950.1_01919.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1950.1_01919.t1 MVFWRCYMNMKGSALAEPIVVMKTLLYTFYLDYNGSNLNDICLGFRKYRDNGSVQCKKDRYHLTDYSTVPSQLEKCHIEG LEELRIFIRSVNNEQADILRISPTKGDTLDIPNFFVHMPIIDEDGNHICTDMDQRKVRYTRIENILCEKPVSKRLQVVYI LGEAGYGKSMICERIVKLWCDAYRLEIKENEKLGSSDSDESRFLKRFEFLFFVKMAYLRKDHTSPISMIQEFYGLNSSQK EILKEILEKDLSTNLVVLDAIDEWNVPLSKLKDMLESFRSMPKCTILISMRSWKFMEVKEICRPKFDRVIRLNGLNNDGM KELTTKILRNYTEKNTTDENDKDLQDFERRSKQVHDSMSASPVHLRSFLRIPLLTIYCAIALYEGGEMESSWAFLQSSVI EILLRRYCKTQQSGIEESMQTETESRLSDILRKHPYLANNMSSLSSLGKVAFENLTSGGTSSVIRENKLNEELGKDSVEL FLRTGILIKIHTSSRFYEDNIIIRFLHRSVQEFLAALYLFNSGTETEVLKSLTAAVKDINEAFKWSNILIVLSGLSPMIG CVISKHLKNLANKDEDVLSYRSTFHGNTYQKVLHLYGLQLRCYSETRGSKTIDAFTVDRRFKFWFSDIILMANETDELFV RESAKVLQCHANEIKSLSIVCIPDDNINGITNDEIKAFLDSSSSIESFYIDGYAKGNCRLFRSYSQRMSCLRTLGLANVG FHKNALTDLLRTNESKKGINSLLLLYIKPTEDLSDVNQYHVSSNNLKSASISNCMVPHSYVISTVLPRKRPEIPVLEKII ETLPSYQNLTTLHITYMESKEDRQMLIKVFPELIKLETLSSFSYIGSSQHQNTDDVYDTSIVSNIMKLRQLREISLSLIH LKENIIDIAFNSKIESVVLIKFEMNSPDDWMSFLDSATSNRPVKKVVLCDTNIRREDIDKYCNSPDTQIFVHNQDWIN |
|