Gene
| Gene Model ID | pfu_aug2.0_1955.1_18609 |
|---|---|
| Locus | scaffold1955.1 : 6046 ... 13041 : + |
| To GenomeBrowser | scaffold1955.1:6046..13041 |
| Genes list of scaffold | scaffold1955.1 |
| Synonym | pfu_aug1.0_7719.1_09623 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1955.1_18609.t1 | 12 | 1 | zf-H2C2_2 | 277 | 294 | 4.7e-25 | 86.6 | 0.0071 | 15.0 | 6.0 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 1 | zf-H2C2_5 | 285 | 307 | 7.8e-24 | 82.4 | 0.00064 | 1.4 | 9.3 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 1 | zf-C2H2_4 | 285 | 307 | 1.6e-19 | 68.7 | 0.0019 | 4.0 | 7.9 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 1 | zf-C2H2 | 285 | 307 | 2.3e-17 | 62.1 | 0.012 | 25.0 | 5.4 |
| pfu_aug2.0_1955.1_18609.t1 | 12 | 2 | zf-H2C2_2 | 301 | 310 | 4.7e-25 | 86.6 | 7.0 | 15000.0 | -5.3 |
| pfu_aug2.0_1955.1_18609.t1 | 12 | 3 | zf-H2C2_2 | 356 | 369 | 4.7e-25 | 86.6 | 0.056 | 120.0 | 3.2 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 2 | zf-H2C2_5 | 361 | 382 | 7.8e-24 | 82.4 | 5.5e-07 | 0.0012 | 18.9 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 2 | zf-C2H2_4 | 361 | 382 | 1.6e-19 | 68.7 | 7.4e-06 | 0.016 | 15.5 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 2 | zf-C2H2 | 361 | 382 | 2.3e-17 | 62.1 | 0.00048 | 1.0 | 9.8 |
| pfu_aug2.0_1955.1_18609.t1 | 12 | 4 | zf-H2C2_2 | 375 | 397 | 4.7e-25 | 86.6 | 3.7e-05 | 0.079 | 13.2 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 3 | zf-C2H2_4 | 388 | 410 | 1.6e-19 | 68.7 | 9.8e-06 | 0.021 | 15.1 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 3 | zf-C2H2 | 388 | 410 | 2.3e-17 | 62.1 | 5.2e-05 | 0.11 | 12.8 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 3 | zf-H2C2_5 | 390 | 410 | 7.8e-24 | 82.4 | 0.0003 | 0.63 | 10.3 |
| pfu_aug2.0_1955.1_18609.t1 | 12 | 5 | zf-H2C2_2 | 404 | 424 | 4.7e-25 | 86.6 | 0.00014 | 0.29 | 11.5 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 4 | zf-C2H2_4 | 416 | 438 | 1.6e-19 | 68.7 | 0.0086 | 18.0 | 5.9 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 4 | zf-C2H2 | 417 | 438 | 2.3e-17 | 62.1 | 0.015 | 31.0 | 5.1 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 4 | zf-H2C2_5 | 418 | 438 | 7.8e-24 | 82.4 | 0.31 | 670.0 | 0.8 |
| pfu_aug2.0_1955.1_18609.t1 | 12 | 6 | zf-H2C2_2 | 430 | 472 | 4.7e-25 | 86.6 | 1.1e-05 | 0.024 | 14.9 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 5 | zf-H2C2_5 | 461 | 479 | 7.8e-24 | 82.4 | 3.3e-06 | 0.007 | 16.5 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 5 | zf-C2H2_4 | 461 | 483 | 1.6e-19 | 68.7 | 6.9e-06 | 0.015 | 15.6 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 5 | zf-C2H2 | 461 | 483 | 2.3e-17 | 62.1 | 0.00022 | 0.47 | 10.9 |
| pfu_aug2.0_1955.1_18609.t1 | 12 | 7 | zf-H2C2_2 | 476 | 495 | 4.7e-25 | 86.6 | 2.6e-06 | 0.0056 | 16.9 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 6 | zf-H2C2_5 | 489 | 511 | 7.8e-24 | 82.4 | 6.2e-06 | 0.013 | 15.6 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 6 | zf-C2H2_4 | 489 | 511 | 1.6e-19 | 68.7 | 0.062 | 130.0 | 3.2 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 6 | zf-C2H2 | 489 | 511 | 2.3e-17 | 62.1 | 0.0078 | 17.0 | 6.0 |
| pfu_aug2.0_1955.1_18609.t1 | 12 | 8 | zf-H2C2_2 | 505 | 527 | 4.7e-25 | 86.6 | 1.8e-07 | 0.00037 | 20.6 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 7 | zf-H2C2_5 | 517 | 522 | 7.8e-24 | 82.4 | 0.48 | 1000.0 | 0.2 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 7 | zf-C2H2_4 | 517 | 537 | 1.6e-19 | 68.7 | 8.5e-05 | 0.18 | 12.2 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 7 | zf-C2H2 | 517 | 538 | 2.3e-17 | 62.1 | 1.5e-05 | 0.033 | 14.5 |
| pfu_aug2.0_1955.1_18609.t1 | 12 | 9 | zf-H2C2_2 | 584 | 597 | 4.7e-25 | 86.6 | 0.055 | 120.0 | 3.2 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 8 | zf-H2C2_5 | 588 | 607 | 7.8e-24 | 82.4 | 1.6e-06 | 0.0034 | 17.5 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 8 | zf-C2H2_4 | 588 | 610 | 1.6e-19 | 68.7 | 4.5e-06 | 0.0095 | 16.2 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 8 | zf-C2H2 | 588 | 610 | 2.3e-17 | 62.1 | 5.4e-07 | 0.0011 | 19.1 |
| pfu_aug2.0_1955.1_18609.t1 | 12 | 10 | zf-H2C2_2 | 602 | 624 | 4.7e-25 | 86.6 | 2.0e-07 | 0.00042 | 20.4 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 9 | zf-H2C2_5 | 616 | 639 | 7.8e-24 | 82.4 | 2.7e-07 | 0.00056 | 19.9 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 9 | zf-C2H2_4 | 616 | 638 | 1.6e-19 | 68.7 | 0.0026 | 5.6 | 7.5 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 9 | zf-C2H2 | 616 | 638 | 2.3e-17 | 62.1 | 1.1e-05 | 0.023 | 15.0 |
| pfu_aug2.0_1955.1_18609.t1 | 12 | 11 | zf-H2C2_2 | 630 | 654 | 4.7e-25 | 86.6 | 5.3e-09 | 1.1e-05 | 25.4 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 10 | zf-H2C2_5 | 645 | 666 | 7.8e-24 | 82.4 | 7.4e-06 | 0.016 | 15.4 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 10 | zf-C2H2_4 | 645 | 666 | 1.6e-19 | 68.7 | 1.9e-05 | 0.041 | 14.2 |
| pfu_aug2.0_1955.1_18609.t1 | 10 | 10 | zf-C2H2 | 645 | 666 | 2.3e-17 | 62.1 | 3.2e-05 | 0.068 | 13.5 |
| pfu_aug2.0_1955.1_18609.t1 | 12 | 12 | zf-H2C2_2 | 658 | 667 | 4.7e-25 | 86.6 | 0.093 | 200.0 | 2.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1955.1_18609.t1 | gi|260823096|ref|XP_002604019.1| | hypothetical protein BRAFLDRAFT_57766 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1955.1_18609.t1 | gi|260804320|ref|XP_002597036.1| | hypothetical protein BRAFLDRAFT_96185 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1955.1_18609.t1 | gi|260823016|ref|XP_002603979.1| | hypothetical protein BRAFLDRAFT_71733 [Branchiostoma floridae] | 1.4013e-45 |
| pfu_aug2.0_1955.1_18609.t1 | gi|260823002|ref|XP_002603972.1| | hypothetical protein BRAFLDRAFT_71740 [Branchiostoma floridae] | 1.4013e-45 |
Transcript
| Transcript ID | pfu_aug2.0_1955.1_18609.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1955.1_18609.t1 atggaagtcagactgctgtctcaacaagaggagaaatttgccttgtttgtagagaacatactcagacatgggaaggaatt gtcaaccaacgaccttggtgaccttcagcaggaggctgctcatagtaaccatggtgataatcaacatgaatccacaaata accatggaaacatagatcagaatgttcacagtaactatgctaacagccaacaggaagtgttgtttagtaaccttggcgta aaagaagaggtcacagaacatcaccatggcaacaaacaactggaaggcatcgatactgccattgacttgagtaagaaaac agttgatgaaagacatataataaagggcagccaaaatgatacacataaaggaggcagtaacattaatgtgaaagaggctt tgttaaaaaagttatgcaaagatcgggagaaaaaatatagcatgtcaagtcaacgtaatattagtgatggaaggaaccaa cgtccacaggagcccatactagatcattcttatatcagcatgtcaaaaaggtataatgatatcaaagatgatctaaaaga actaaagaactttgtagtagaagaccatcacaacctgtcaaacggtaaaagaaaacatgatcaggatatgaatgaagatt ctaagaatgttgtgcagaatacagatgatacatcccttgattcattgcagaaaatggatgatacttcccaagattcagta cagaaaatggaagagtcatctctggattatgagggagaggacgttggttctatggatgccatgcaggattctgaacagct tgagagcaaaagtatgacacagcagatgaagaagaaaaaaggtcaaatgcactataaatgtaatatatgtgggtatggaa caaacagctataagctccataagagacataaaaacactcataaggagccgcaacatataacaagggccgtaactcagagt aatagaaaggaggagaacgttaagaaaactcctgtcgtcgaaaaaaagaagaagaagacaacaagtaccagatattgtag aaaaattaaaccagaagtagcggtaccagagaaaaagctcaggtgtgacaaatgtcagttcagaacagacagtgaagaga aactaaaaaggcatatgactgtacatcaatcaccagattcttttgtctgtgggatttgtaattttaaatgtaggacaaaa acgggacttggacgtcatcttaagaaacacagagaagaaatgccgtggatttgtcagatctgtcattaccaagcccacga tgagttcagtctcaacctccatatgaaatcacattctacgggggaaatggatgatagtagcgccaacaaaaaaataccac aggtgccgaagaaacagagatttaagtgcgatgtatgcgattttagcacaactaatgaggaggctttccaaaaacattgg ggtaaacatactggggaaaagtactacaaatgtgacgagtgtattttcggcaccaacaataagtcagtttacctgtctca tcagcgtctacatttgggagccaagccgtaccaatgtcagacttgcggatcacggtttactcagatgaggggtctgaaga cacaccagaactctaacctctgtacgcccgcctctggacagaaggctgtcaaccaaacggtcaaaataacgaaaaacacg gctaaagtagtggaatgggctaaagctatgatatccaaaaaagaagtgagtacctcatctggtgatacaaagcctggcat ttacaaatgtaatcagtgtgaattctccacaaacaggccaagtcaccttagccgacatattataatacacttagatgcca agccgtttaaatgtgaactgtgtgactacagtgctaactttaagatcaaccttacaacacatatgagggtccactcagga gagaagccaaataaatgtgaattatgtccatactccacatatcgagaagatcacttgaggcgccacctggcaacacacag ggagttgacgagcgcaaagggtcttcatgactttttgctaaggataacaatgacaagaagaaccatataa |
|
Protein
| Protein ID | pfu_aug2.0_1955.1_18609.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1955.1_18609.t1 MEVRLLSQQEEKFALFVENILRHGKELSTNDLGDLQQEAAHSNHGDNQHESTNNHGNIDQNVHSNYANSQQEVLFSNLGV KEEVTEHHHGNKQLEGIDTAIDLSKKTVDERHIIKGSQNDTHKGGSNINVKEALLKKLCKDREKKYSMSSQRNISDGRNQ RPQEPILDHSYISMSKRYNDIKDDLKELKNFVVEDHHNLSNGKRKHDQDMNEDSKNVVQNTDDTSLDSLQKMDDTSQDSV QKMEESSLDYEGEDVGSMDAMQDSEQLESKSMTQQMKKKKGQMHYKCNICGYGTNSYKLHKRHKNTHKEPQHITRAVTQS NRKEENVKKTPVVEKKKKKTTSTRYCRKIKPEVAVPEKKLRCDKCQFRTDSEEKLKRHMTVHQSPDSFVCGICNFKCRTK TGLGRHLKKHREEMPWICQICHYQAHDEFSLNLHMKSHSTGEMDDSSANKKIPQVPKKQRFKCDVCDFSTTNEEAFQKHW GKHTGEKYYKCDECIFGTNNKSVYLSHQRLHLGAKPYQCQTCGSRFTQMRGLKTHQNSNLCTPASGQKAVNQTVKITKNT AKVVEWAKAMISKKEVSTSSGDTKPGIYKCNQCEFSTNRPSHLSRHIIIHLDAKPFKCELCDYSANFKINLTTHMRVHSG EKPNKCELCPYSTYREDHLRRHLATHRELTSAKGLHDFLLRITMTRRTI |
|