Gene
| Gene Model ID | pfu_aug2.0_1955.1_18611 |
|---|---|
| Locus | scaffold1955.1 : 24536 ... 31700 : + |
| To GenomeBrowser | scaffold1955.1:24536..31700 |
| Genes list of scaffold | scaffold1955.1 |
| Synonym | pfu_aug1.0_7719.1_09621 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tubulin beta-4b chain | GO:0000086 GO:0003725 GO:0003924 GO:0005200 GO:0005436 GO:0005525 GO:0005634 GO:0005829 GO:0005874 GO:0006928 GO:0015321 GO:0016324 GO:0030643 GO:0031526 GO:0035435 GO:0035725 GO:0042267 GO:0042288 GO:0043209 GO:0044341 GO:0045298 GO:0051082 GO:0051084 GO:0051225 GO:0051258 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1955.1_18611.t1 | 1 | 1 | Misat_Tub_SegII | 2 | 71 | 6.7e-06 | 26.1 | 4.4e-09 | 1.6e-05 | 24.8 |
| pfu_aug2.0_1955.1_18611.t1 | 1 | 1 | Tubulin | 3 | 222 | 0.0 | 234.7 | 0.0 | 0.0 | 234.1 |
| pfu_aug2.0_1955.1_18611.t1 | 1 | 1 | Tubulin_C | 261 | 382 | 0.0 | 170.7 | 0.0 | 0.0 | 170.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1955.1_18611.t1 | gi|395844458|ref|XP_003794978.1| | 0.0 | |
| pfu_aug2.0_1955.1_18611.t1 | gi|634865305|ref|XP_007945164.1| | PREDICTED: tubulin beta-4B chain isoform X1 [Orycteropus afer afer] | 0.0 |
| pfu_aug2.0_1955.1_18611.t1 | gi|676493538|ref|XP_009066271.1| | hypothetical protein LOTGIDRAFT_223078 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1955.1_18611.t1 | gi|676451427|ref|XP_009052702.1| | hypothetical protein LOTGIDRAFT_202077 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1955.1_18611.t1 | gi|327290154|ref|XP_003229789.1| | PREDICTED: tubulin beta-4B chain [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1955.1_18611.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1955.1_18611.t1 atgagagaaatagtacatttacaggccgggcaatgtggaaaccaaattggtgctaaattctgggaggtgatctcagacga gcatggtattgatcccaccggcacgtaccatggagattcagacctacagttagagaggatcaatgtctactataacgaag ccacaggcgggaagtatgtcccccgtgccgttttggtggaccttgaaccagggaccatggactctgtcaggtctggacct tttggacaggtcttcagacccgacaatttcgtgtttggtcagagcggtgcagggaacaactgggcaaagggccactacac agagggtgccgaacttgttgactccgtattagacgtagttaggaaggagtctgagagctgtgattgtctacaaggcttcc agctgactcactcactaggtggcggcaccggctcaggcatgggaacactactcatctccaaaatccgtgaagaataccca gacagaatcatgaacacattctccgtagtaccatcacctaaagtatcagacacagtagttgaaccatacaatgccacttt atctgtacatcagcttgtagaaaacaccgatgagacatattgtattgacaatgaagctctttacgacatctgtttccgta cccttaaactgaccacaccaacctacggagatctcaatcatcttgtgtcggcaaccatgtctggtgttaccacatgcctt aggttccctggtcagcttaacgctgatttacgtaaactggctgtcaacatggtacccttcccacgtctccatttcttcat gcctgggttcgctcccctcacatcacgcggcagtcagcagtacagagctcttaccgtccctgagctcacccagcaaatgt ttgatgccaagaacatgatggcggcttgcgatcctcgtcacggacgatacttgactgtggctgccatcttcaggggccgc atgtccatgaaggaagttgatgaacagatgttgaacgtgcagaacaagaacagcagctactttgtcgaatggattcccaa caacgtcaaaactgccgtctgcgacatcccaccacgaggtctcaagatgtccgctacattcatcggcaacagcacagcta tccaggagctgttcaagcgtatttctgagcagttcaccgctatgttccgtcgtaaggctttcttacattggtacactggt gagggtatggacgagatggagtttactgaggctgaatccaacatgaacgacttggtgtcagagtaccaacaataccagga tgctactgccgacgaggagggagagttcgaggaggaggaagaaccagaggaagcttag |
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Protein
| Protein ID | pfu_aug2.0_1955.1_18611.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1955.1_18611.t1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGP FGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYP DRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGR MSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEFEEEEEPEEA |
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