Gene
| Gene Model ID | pfu_aug2.0_1955.1_18612 |
|---|---|
| Locus | scaffold1955.1 : 35456 ... 54597 : + |
| To GenomeBrowser | scaffold1955.1:35456..54597 |
| Genes list of scaffold | scaffold1955.1 |
| Synonym | pfu_aug1.0_5520.1_59790 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1955.1_18612.t1 | 1 | 1 | UCH | 398 | 787 | 4.3e-38 | 130.9 | 9.6003e-42 | 7.1e-38 | 130.2 |
| pfu_aug2.0_1955.1_18612.t1 | 1 | 1 | UCH_1 | 400 | 762 | 1.2e-22 | 80.6 | 3.2e-26 | 2.4e-22 | 79.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1955.1_18612.t1 | gi|426345569|ref|XP_004040479.1| | PREDICTED: ubiquitin carboxyl-terminal hydrolase 38 [Gorilla gorilla gorilla] | 0.0 |
| pfu_aug2.0_1955.1_18612.t1 | gi|326664059|ref|XP_003197722.1| | PREDICTED: ubiquitin carboxyl-terminal hydrolase 38 [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1955.1_18612.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1955.1_18612.t1 atggatgctatcttgaatggtattttgacctccagctatcccgataagttaaagaagcagttaatacaaaagatagcagc caatggagccaatcctcagcctgtagctgtcatacagtctgtgctagagctcacatcaaaatggtacctcaatggtgaaa cagacctcgctcagagtcagggcttgtctgtatatctggcatgggctaggtataacctgagagtgttggagacatttttc agccgtgagtttctgctagagctacttcagcttaagtgccataatgaaggcagtgtctttatcctaataaaggatagcat gacgttattacagcagtcagccgtgttctcagcacatcttcaggtcctggaagcaaaagccatcagctatgtacgcgacc atccctctacaccgtgtctcaaaaacctggccgtatttctggaggactttaagcagtgtatacccaaaggtgactttgcc agtactttctgtatatcgctcatacagtcactcagtctatgcactgtacctgatagtccccaggatgttatagaatacat cagggatgtggagagagtgtgtaagcttgtattcaatatttggaatagctcagattctgagaacatcattatcgattcgt tgaaggccatatttgctgtaatatcagacagcggtgacaataagccgtcgttctgcctggcagcggtcgtacagtttgta cccaatgacatgattgacagagttgttaagtttacaatccagtccagtgtagatgacaggagtatgacggtagcattaca aaggattgttgattggctgcaatggccaacggccaaaaatatcgaccaatggatagtgattttcctcagggctttggcat ctgtaaagaagttcagtattcttatagctgtaacagatagcaaaattgagcaggtatgtgagaagttacagttttcagcg atgtgtgagccagcctttaatgtactggagcacatgttactaagcttccaacattccccagagcctttccacaaggtatt acccatgattcctggcatcgtagaaacactaagggcagataactcagagaggaatacctcatgcctccagagacttgcga gtctattacattgctgtatgtttctccatgctgggtacccggactttttcagaagaggagttatggcatacagcccatcc cctgatgagaagttactagaacaactacagcttgtctttgcttaccttggtcatacacagaggcctgcgtatgcccctat gaccttcagtagagtatccaggccatcatggttcacagcaggacaccagcaagactgctctgaataccttagattcctcc tggatcagctacatgaacaagagaaagccacttgtaaaggtcagaaggtcaaaagggcaaagggtgatgacggggagcca acaagtgttaatggtactaattctgaaagcgccactgtcgccaatagtgatgatgctaaaatacggacattgatagatca aggttttggtggacagttagccacaacatatacttgtctgacttgtggacatcagtcgtccagaaaggaggattttaccg atttaccgcttgcttttcctgagtacagacctgttggttgtccgtctgaagggaaagataaagaaaaagacgacagtggg aagaaagaaaacggagatgtcgaaaccaaagaaaataagtcaaagtcaagtacagagattaaaccgttacatttaaatga tcttttacagtattacttaaagccagagagacttagtggtgataacaagtatttctgtgagaaatgtaactctttacaag acggagaaagaacactggatataatcagtgcacctgactgtttgatattgacgcttttaaggttttcttacgacgttaag cttcagtctcgctcaaaaatttttcgggaggtgaaatatccaaagacaatgattctgcctacaatgcaaaaacaggtgtc ggagttaggtaaaacaaatcctcgacactcactccgagctgctgtgacggacagactggggaagtttgggttagagctca acacagagaaaggggaggtttatagccttaatgctgtagttgtacattcggggacgtcttcagaccatggtcattattat gcgtatgccagacactctatattctgtgatccacattctatctgtgatactatggacgattgtaaagaggaagacgaact agacttcctacaagacaagtggtatttgtttaacgataatcgtgtgtcgtacgccaaatatagctctttttctaatgtta caaaaagatttacaaaggatacagcctatgttctgatctacaagaggattgatcccagcaatgcagaaaagtcagaggtg gatctgaatagctcgatccaccccagggaagttgatccccctctttctagtaaactacgcacagctgtcagtaaagataa tggcctatacctgcaggaacaggagctgtctgccaagaagaggacggcacgtaaacggcaaaatgtgaactcggcatcgt ggtataactataaggatcctgacgacaacgacaaaggacctccaggaagctgtggggggtcgtctggcttcaacaactca gggccaagatttgtgttctag |
|
Protein
| Protein ID | pfu_aug2.0_1955.1_18612.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1955.1_18612.t1 MDAILNGILTSSYPDKLKKQLIQKIAANGANPQPVAVIQSVLELTSKWYLNGETDLAQSQGLSVYLAWARYNLRVLETFF SREFLLELLQLKCHNEGSVFILIKDSMTLLQQSAVFSAHLQVLEAKAISYVRDHPSTPCLKNLAVFLEDFKQCIPKGDFA STFCISLIQSLSLCTVPDSPQDVIEYIRDVERVCKLVFNIWNSSDSENIIIDSLKAIFAVISDSGDNKPSFCLAAVVQFV PNDMIDRVVKFTIQSSVDDRSMTVALQRIVDWLQWPTAKNIDQWIVIFLRALASVKKFSILIAVTDSKIEQVCEKLQFSA MCEPAFNVLEHMLLSFQHSPEPFHKVLPMIPGIVETLRADNSERNTSCLQRLASLLHCCMFLHAGYPDFFRRGVMAYSPS PDEKLLEQLQLVFAYLGHTQRPAYAPMTFSRVSRPSWFTAGHQQDCSEYLRFLLDQLHEQEKATCKGQKVKRAKGDDGEP TSVNGTNSESATVANSDDAKIRTLIDQGFGGQLATTYTCLTCGHQSSRKEDFTDLPLAFPEYRPVGCPSEGKDKEKDDSG KKENGDVETKENKSKSSTEIKPLHLNDLLQYYLKPERLSGDNKYFCEKCNSLQDGERTLDIISAPDCLILTLLRFSYDVK LQSRSKIFREVKYPKTMILPTMQKQVSELGKTNPRHSLRAAVTDRLGKFGLELNTEKGEVYSLNAVVVHSGTSSDHGHYY AYARHSIFCDPHSICDTMDDCKEEDELDFLQDKWYLFNDNRVSYAKYSSFSNVTKRFTKDTAYVLIYKRIDPSNAEKSEV DLNSSIHPREVDPPLSSKLRTAVSKDNGLYLQEQELSAKKRTARKRQNVNSASWYNYKDPDDNDKGPPGSCGGSSGFNNS GPRFVF |
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