Gene
| Gene Model ID | pfu_aug2.0_1955.1_18613 |
|---|---|
| Locus | scaffold1955.1 : 55998 ... 68425 : - |
| To GenomeBrowser | scaffold1955.1:55998..68425 |
| Genes list of scaffold | scaffold1955.1 |
| Synonym | pfu_aug1.0_7719.1_09619 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| caseinolytic peptidase b protein partial | GO:0005524 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1955.1_18613.t1 | 1 | 1 | Zeta_toxin | 10 | 68 | 7.8e-06 | 25.1 | 2.6e-08 | 2.4e-05 | 23.5 |
| pfu_aug2.0_1955.1_18613.t1 | 1 | 1 | AAA_2 | 16 | 205 | 6.30584e-44 | 149.8 | 0.0 | 1.09301e-43 | 149.0 |
| pfu_aug2.0_1955.1_18613.t1 | 1 | 1 | AAA_5 | 17 | 139 | 5.3e-10 | 39.1 | 2.1e-12 | 2.0e-09 | 37.3 |
| pfu_aug2.0_1955.1_18613.t1 | 2 | 1 | AAA | 17 | 140 | 2.2e-09 | 37.6 | 1.3e-10 | 1.2e-07 | 31.9 |
| pfu_aug2.0_1955.1_18613.t1 | 3 | 1 | ClpB_D2-small | 102 | 130 | 1.9e-10 | 40.5 | 5.8 | 5400.0 | -2.7 |
| pfu_aug2.0_1955.1_18613.t1 | 3 | 2 | ClpB_D2-small | 175 | 195 | 1.9e-10 | 40.5 | 0.74 | 690.0 | 0.2 |
| pfu_aug2.0_1955.1_18613.t1 | 3 | 3 | ClpB_D2-small | 212 | 290 | 1.9e-10 | 40.5 | 2.5e-12 | 2.4e-09 | 36.9 |
| pfu_aug2.0_1955.1_18613.t1 | 2 | 2 | AAA | 249 | 300 | 2.2e-09 | 37.6 | 0.08 | 74.0 | 3.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1955.1_18613.t1 | gi|699589006|ref|XP_009865688.1| | PREDICTED: caseinolytic peptidase B protein homolog, partial [Apaloderma vittatum] | 0.0 |
| pfu_aug2.0_1955.1_18613.t1 | gi|701309735|ref|XP_010015814.1| | PREDICTED: caseinolytic peptidase B protein homolog, partial [Nestor notabilis] | 0.0 |
| pfu_aug2.0_1955.1_18613.t1 | gi|686586259|ref|XP_009286862.1| | PREDICTED: caseinolytic peptidase B protein homolog, partial [Aptenodytes forsteri] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1955.1_18613.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1955.1_18613.t1 atggttaccagcagtaatggttggtatgatgaggaccaccctcttgtcatgctctttctaggatcatctggtataggtaa aacagagctggcaaaacaaacggctaaatacctccataaagatcttaaaaagggcttcatcagaatagatatgtcagagt atcaggagaaacatgaggtggcaaagtttattggatccccgccaggctacgtgggtcatgaggaagggggacaactcacc aagaggttgacagagttccctaaagctgtggttctatttgatgaagtagagaaagcccaccctgatgtgctgaccattat gttacagctctttgatgagggtcgtttgacggacggtaaagggaagacaatagagtgtaaggatgctgtgtttattatga catctaacttggccagtgaggagatagccggccatgccctacaactacggcaagaagtcaaggagtatgataaacacaaa caggccagtaaactagaggatcttgaggccacagagagaataaccatatcacgtcaattcaaggacagagtcgttcgtcc tatattaaagagggcattcaagagagatgaatttctgggaaggataaatgaaatagtttactttctccctttttcaagat ctgaactgagtaaattagtgagtaaggagctggaattctgggcaaatcaggctgacaagaagcacaacataaagttacaa tgggatcataatgttgtagacatattggcagatggatatgatttacattacggggccaggtctataaaatatgaggtgga gagaagagtcgtgacccagcttgccatggctcatgagaggaagctaattgataaaggatgtgtcataaaactaacggcct ctaacgcggaggacatgacaaaaacggtgaatcaacctgacaaaccagctaccatcaaactacagatactacaaaaaggc aaaaaggaggagtttgtggatattgaccttcacacagataaaaatccatttgatcttggctttaagtaa |
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Protein
| Protein ID | pfu_aug2.0_1955.1_18613.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1955.1_18613.t1 MVTSSNGWYDEDHPLVMLFLGSSGIGKTELAKQTAKYLHKDLKKGFIRIDMSEYQEKHEVAKFIGSPPGYVGHEEGGQLT KRLTEFPKAVVLFDEVEKAHPDVLTIMLQLFDEGRLTDGKGKTIECKDAVFIMTSNLASEEIAGHALQLRQEVKEYDKHK QASKLEDLEATERITISRQFKDRVVRPILKRAFKRDEFLGRINEIVYFLPFSRSELSKLVSKELEFWANQADKKHNIKLQ WDHNVVDILADGYDLHYGARSIKYEVERRVVTQLAMAHERKLIDKGCVIKLTASNAEDMTKTVNQPDKPATIKLQILQKG KKEEFVDIDLHTDKNPFDLGFK |
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