Gene
| Gene Model ID | pfu_aug2.0_1956.1_21870 |
|---|---|
| Locus | scaffold1956.1 : 1 ... 15065 : + |
| To GenomeBrowser | scaffold1956.1:1..15065 |
| Genes list of scaffold | scaffold1956.1 |
| Synonym | pfu_aug1.0_1201.1_07834 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nuclear transcription factor y subunit alpha isoform x1 | GO:0003677 GO:0003700 GO:0006355 GO:0016602 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1956.1_21870.t1 | 1 | 1 | CBFB_NFYA | 190 | 246 | 4.7e-27 | 94.3 | 9.6e-31 | 7.1e-27 | 93.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1956.1_21870.t1 | gi|524883576|ref|XP_005098415.1| | PREDICTED: nuclear transcription factor Y subunit alpha-like isoform X4 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1956.1_21870.t1 | gi|524883570|ref|XP_005098412.1| | PREDICTED: nuclear transcription factor Y subunit alpha-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_1956.1_21870.t1 | gi|391331389|ref|XP_003740129.1| | PREDICTED: nuclear transcription factor Y subunit alpha-like [Metaseiulus occidentalis] | 4.0e-28 |
| pfu_aug2.0_1956.1_21870.t1 | gi|260826878|ref|XP_002608392.1| | hypothetical protein BRAFLDRAFT_127600 [Branchiostoma floridae] | 9.0e-28 |
Transcript
| Transcript ID | pfu_aug2.0_1956.1_21870.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1956.1_21870.t1 aagttggaccaacttgaagagcttagaaatggctgataatgatcagaatacttttacggtctttgacacggaaactcagc agccagtcaccgtgaccgtaacaccaaatgacgagggccacagtgtccatcaaggtgtacaatacataacacctgatggg gtccctatccatcatattacacagcctggaggtgaagttgttcaggtgtcagatgcttctttattgacaaacacgtcatt ctcaagcgtgagtcaaggggcacagaacagcagtgtgccagtgatggtgtctgctggttcatctccggcacagagtgtgg tgcagcaacaaggcaacatgattgtacaacagcaacctgcagcaccgcaagtggcaaacacaacatcaatgacgccagca gtgggtgttccacagatgttgtttctgaaccaggtcactgtgaatggtcagacgtcctttgttttggtcgatgccaacaa taaacctgtacaactgccgcaaggtatccaagttattaacttgccaacacaagcagctaatcaacaaatatcaacaggtg acacaggagaggaacctttatatgtcaatgctaagcaataccatagaattctgaagagacggcaagctagagctaaactt gaggctctcggaaaaatacccaaagaaagacagaaatacctgtatgaatctagacatcgtcatgcaatgaacaggcagcg gggatctgggggtgtgtttgttaggggaggaaaggaagaaatgggagatgacgtagtgacggaaagtcgcaatggcagca taagtgtaaatgataccaagccggacccccctcccagaacacctgtacccatcgccatagcaccaagtactacgacatcc cagaattcattttccgtttcgcagttgagcggcaatcactcttccacaaccctggagctccccctaggtcttgcccagca gatgggcgtgtccctggcacagcagatatcctctggacagatcaccatagctcataatcctggcattagtaacacaaata tcaccactaatggcacggccatagaaaatgctacaggggacattctaaataatttgcaaacatag |
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Protein
| Protein ID | pfu_aug2.0_1956.1_21870.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1956.1_21870.t1 SWTNLKSLEMADNDQNTFTVFDTETQQPVTVTVTPNDEGHSVHQGVQYITPDGVPIHHITQPGGEVVQVSDASLLTNTSF SSVSQGAQNSSVPVMVSAGSSPAQSVVQQQGNMIVQQQPAAPQVANTTSMTPAVGVPQMLFLNQVTVNGQTSFVLVDANN KPVQLPQGIQVINLPTQAANQQISTGDTGEEPLYVNAKQYHRILKRRQARAKLEALGKIPKERQKYLYESRHRHAMNRQR GSGGVFVRGGKEEMGDDVVTESRNGSISVNDTKPDPPPRTPVPIAIAPSTTTSQNSFSVSQLSGNHSSTTLELPLGLAQQ MGVSLAQQISSGQITIAHNPGISNTNITTNGTAIENATGDILNNLQT |
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