Gene
| Gene Model ID | pfu_aug2.0_197.1_23643 |
|---|---|
| Locus | scaffold197.1 : 986 ... 43298 : + |
| To GenomeBrowser | scaffold197.1:986..43298 |
| Genes list of scaffold | scaffold197.1 |
| Synonym | pfu_aug1.0_13075.1_68592 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| syntaxin-1a isoform x3 | GO:0005515 GO:0016020 GO:0016192 GO:0044765 GO:0051649 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_197.1_23643.t1 | 4 | 1 | SNARE | 1 | 16 | 2.0e-15 | 56.2 | 0.028 | 23.0 | 4.7 |
| pfu_aug2.0_197.1_23643.t1 | 2 | 1 | Syntaxin | 2 | 89 | 4.8e-33 | 113.4 | 5.8e-36 | 4.8e-33 | 113.4 |
| pfu_aug2.0_197.1_23643.t1 | 2 | 1 | Syntaxin_2 | 3 | 104 | 7.7e-06 | 25.8 | 1.1e-08 | 8.8e-06 | 25.6 |
| pfu_aug2.0_197.1_23643.t1 | 4 | 2 | SNARE | 34 | 45 | 2.0e-15 | 56.2 | 0.64 | 530.0 | 0.3 |
| pfu_aug2.0_197.1_23643.t1 | 2 | 2 | Syntaxin_2 | 114 | 159 | 7.7e-06 | 25.8 | 0.24 | 190.0 | 2.1 |
| pfu_aug2.0_197.1_23643.t1 | 4 | 3 | SNARE | 139 | 171 | 2.0e-15 | 56.2 | 1.6e-10 | 1.3e-07 | 31.1 |
| pfu_aug2.0_197.1_23643.t1 | 2 | 2 | Syntaxin | 157 | 157 | 4.8e-33 | 113.4 | 1.8 | 1500.0 | -0.7 |
| pfu_aug2.0_197.1_23643.t1 | 4 | 4 | SNARE | 176 | 208 | 2.0e-15 | 56.2 | 8.3e-09 | 6.8e-06 | 25.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_197.1_23643.t1 | gi|325197178|ref|NP_001191428.1| | syntaxin [Aplysia californica] | 0.0 |
| pfu_aug2.0_197.1_23643.t1 | gi|270014238|gb|EFA10686.1| | Syntaxin 1A [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_197.1_23643.t1 | gi|662207216|ref|XP_008477101.1| | PREDICTED: syntaxin-1A-like [Diaphorina citri] | 0.0 |
| pfu_aug2.0_197.1_23643.t1 | gi|242006139|ref|XP_002423912.1| | syntaxin-1A, putative [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_197.1_23643.t1 | gi|751233906|ref|XP_011170658.1| | PREDICTED: syntaxin-1A isoform X1 [Solenopsis invicta] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_197.1_23643.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_197.1_23643.t1 atgatagacaaaatagcgtcaaatgtagatgaagtgaagaaaaaacatagtgccatattgtcagctcctcaaacagatga caaaatgaaggaggagttagaagaacttatgacagatataaagaaaacagcaaataaagttcgatcaaaattaaaagtta ttgaacaaaatatagaacaagaagaacattccaataaatcctcagcggaccttaggatacgtaaaactcagcacgccaca ctctcacgtaaatttgtggaagtcatgaacgattacaatgcgtgtcaaatagactacagagagaggtgtaagggacgcat tcaaagacagctggaaatcacgggtagaactacaacaaatgaggaattagaggacatgttagagtccggtaatccagcta tatttacacaaggaggcgaaatgatagacaggatagaatataatgtagaacaggcggtggattatatcgaaacggcaaaa atggacaccaaaaaagccgtcaaataccagagtaaagctaggcggggcgaaatgatagaccgagtagaatataatgtaaa tcaggcagtggaattcgtagataccgcggcaagagacacaaaacaggctatgaaatatcaaagtaaagcgagacggatga atggatacaaaatatgggtagaaactttaaaaggttag |
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Protein
| Protein ID | pfu_aug2.0_197.1_23643.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_197.1_23643.t1 MIDKIASNVDEVKKKHSAILSAPQTDDKMKEELEELMTDIKKTANKVRSKLKVIEQNIEQEEHSNKSSADLRIRKTQHAT LSRKFVEVMNDYNACQIDYRERCKGRIQRQLEITGRTTTNEELEDMLESGNPAIFTQGGEMIDRIEYNVEQAVDYIETAK MDTKKAVKYQSKARRGEMIDRVEYNVNQAVEFVDTAARDTKQAMKYQSKARRMNGYKIWVETLKG |
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