Gene
| Gene Model ID | pfu_aug2.0_197.1_23652 |
|---|---|
| Locus | scaffold197.1 : 277042 ... 293618 : + |
| To GenomeBrowser | scaffold197.1:277042..293618 |
| Genes list of scaffold | scaffold197.1 |
| Synonym | pfu_aug1.0_5874.1_52639 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| trna wybutosine-synthesizing protein 1 homolog | GO:0005506 GO:0008033 GO:0010181 GO:0016491 GO:0016829 GO:0051539 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_197.1_23652.t1 | 1 | 1 | Flavodoxin_1 | 40 | 133 | 2.1e-12 | 47.2 | 1.0e-15 | 5.0e-12 | 46.0 |
| pfu_aug2.0_197.1_23652.t1 | 1 | 1 | Radical_SAM | 231 | 412 | 6.1e-26 | 91.5 | 2.7e-29 | 1.3e-25 | 90.4 |
| pfu_aug2.0_197.1_23652.t1 | 1 | 1 | Wyosine_form | 414 | 477 | 6.2e-27 | 93.4 | 3.6e-30 | 1.8e-26 | 92.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_197.1_23652.t1 | gi|505845103|ref|XP_004616035.1| | PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Sorex araneus] | 0.0 |
| pfu_aug2.0_197.1_23652.t1 | gi|676426455|ref|XP_009044629.1| | hypothetical protein LOTGIDRAFT_135774 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_197.1_23652.t1 | gi|260820844|ref|XP_002605744.1| | hypothetical protein BRAFLDRAFT_280024 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_197.1_23652.t1 | gi|156394101|ref|XP_001636665.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_197.1_23652.t1 | gi|524888169|ref|XP_005100660.1| | PREDICTED: tRNA wybutosine-synthesizing protein 1 homolog isoform X1 [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_197.1_23652.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_197.1_23652.t1 atgttggaaggtttcctgacgtccgttgtatcggagtacctgccagttccggtatggacggctattttagctgccgtctg cctcgtatggatcttatttgataagaaaagcggcaataatctgaagagttttgcagagatactacagagagaagcagagg agagaggctttcaatgtaaaacactgaacatggaggactatgaccctgatgataaactcgctgaggaggcagataagatg tgctgcttggtgctagttgtctccacttatacagaaggttcaccaccagagggagctaaatggttctataaatggctgca ggaaacagcctcagatttccgtgtccagaaaactcttctaggtcgtttgaagtactcggtattcggacttggaaattctt ttatgggaggagggggaatggtagatgtggaggatctaggcaaagtcatgaacaacatgaaaaaagcaaaggtaagaagg aaaaaagaagaggagtccagaaaatctggagagccgagggaaatgattacacccatgttaaagaaagctttagagaaaca gggataccgtctgattggttcacactcaggggtcaaactctgtagatggacaaagtctatgttacgaggaaggggcggat gttacaaacacacattttacggtatcgagagtcacagatgtatggagacgacaccgagtctggcctgtgctaacaaatgt gtattctgctggagacatcataccaatccagtgggaacagaatggagatggaagatggacgaccctaacactgtatattt gggggctctacaaaaccatgtcggtctcataaaacagtttaaaggtgtaccaggggtgaaaccagagagatttgctgagg gtcttgagcccaaacattgtgccttatcgctggtcggcgagcccattatgtatccggaaatcaacaaatttataaactta ctccataacaaaggaatctctacattcttagtcaccaatgctcagttcccagatgctatcaagaatttatcgccagtcac tcaactttacgtcagtgtagatgctagcacaaaagacagtttgaaaaaaatagatcgtccgttgttcagagacttctggg atagatttatcgacagttttacggcactttccgacaagaagcaaagaaccgtgtacagactgacgttagtaaaagcatgg aatacggaagagctagagaattatgcagccctggtttctaagggaaatcccgattttattgaagttaagggtgtcactta ctgtggggaatctaaggcttccacactaacgatgaaaaacgtaccttggcacgaagaggtggttggctttgtacagcaac ttgccgacagactggaggattatgagatagcctccgaacatgaacattcaaactgcctgcttctggctcataagaagttc aaagtagacggagaatggtggacatggattgattacccacgattccattccctaatgaagacgtatacagaaagtaacgg aaagaagactttttctgcagaggattacatggctaaaacgccccactgggccgtattcggggccaaagagcagggctttg acccgatagagactaggtttttcagaaagaagcaaaaagatattgcagggtgttga |
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Protein
| Protein ID | pfu_aug2.0_197.1_23652.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_197.1_23652.t1 MLEGFLTSVVSEYLPVPVWTAILAAVCLVWILFDKKSGNNLKSFAEILQREAEERGFQCKTLNMEDYDPDDKLAEEADKM CCLVLVVSTYTEGSPPEGAKWFYKWLQETASDFRVQKTLLGRLKYSVFGLGNSFMGGGGMVDVEDLGKVMNNMKKAKVRR KKEEESRKSGEPREMITPMLKKALEKQGYRLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLACANKC VFCWRHHTNPVGTEWRWKMDDPNTVYLGALQNHVGLIKQFKGVPGVKPERFAEGLEPKHCALSLVGEPIMYPEINKFINL LHNKGISTFLVTNAQFPDAIKNLSPVTQLYVSVDASTKDSLKKIDRPLFRDFWDRFIDSFTALSDKKQRTVYRLTLVKAW NTEELENYAALVSKGNPDFIEVKGVTYCGESKASTLTMKNVPWHEEVVGFVQQLADRLEDYEIASEHEHSNCLLLAHKKF KVDGEWWTWIDYPRFHSLMKTYTESNGKKTFSAEDYMAKTPHWAVFGAKEQGFDPIETRFFRKKQKDIAGC |
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