Gene
| Gene Model ID | pfu_aug2.0_19712.1_09963 |
|---|---|
| Locus | scaffold19712.1 : 1 ... 1408 : - |
| To GenomeBrowser | scaffold19712.1:1..1408 |
| Genes list of scaffold | scaffold19712.1 |
| Synonym | pfu_aug1.0_6411.1_38340 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| syntaxin-17 isoform x2 | GO:0000046 GO:0000149 GO:0000421 GO:0005484 GO:0005765 GO:0005791 GO:0005793 GO:0005829 GO:0006886 GO:0006888 GO:0006906 GO:0007030 GO:0016021 GO:0019903 GO:0030134 GO:0030868 GO:0031201 GO:0034497 GO:0044233 GO:0048278 GO:0097111 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_19712.1_09963.t1 | 1 | 1 | SNARE | 2 | 51 | 1.4e-11 | 43.9 | 1.3e-14 | 1.7e-11 | 43.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_19712.1_09963.t1 | gi|585674771|ref|XP_006818668.1| | PREDICTED: syntaxin-17-like, partial [Saccoglossus kowalevskii] | 2.0e-29 |
| pfu_aug2.0_19712.1_09963.t1 | gi|620970346|ref|XP_001506027.2| | PREDICTED: syntaxin-17 isoform X1 [Ornithorhynchus anatinus] | 2.0e-23 |
| pfu_aug2.0_19712.1_09963.t1 | gi|620970348|ref|XP_007659866.1| | PREDICTED: syntaxin-17 isoform X2 [Ornithorhynchus anatinus] | 3.0e-23 |
| pfu_aug2.0_19712.1_09963.t1 | gi|194034089|ref|XP_001927804.1| | PREDICTED: syntaxin-17 isoform X1 [Sus scrofa] | 1.0e-22 |
| pfu_aug2.0_19712.1_09963.t1 | gi|21740035|emb|CAD39034.1| | hypothetical protein [Homo sapiens] | 7.0e-22 |
Transcript
| Transcript ID | pfu_aug2.0_19712.1_09963.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19712.1_09963.t1 aacttagtggagttaaacacgatgatccatgaattctcgtcagccgttcaaaatcaacaagaatctatagatcgtattga ggataatatagataaagctcatgagaatgttcgtagtggagttaccaaccttagcaaggcctcaaagtacaaagccgcgg cattccccgtggcaggggcattaataggaacaatgattggtggacctgttggattcctcgcagggctaaaaataggatca gttgcagcaataggaggcggggctgcag |
|
Protein
| Protein ID | pfu_aug2.0_19712.1_09963.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_19712.1_09963.t1 NLVELNTMIHEFSSAVQNQQESIDRIEDNIDKAHENVRSGVTNLSKASKYKAAAFPVAGALIGTMIGGPVGFLAGLKIGS VAAIGGGAA |
|