Gene
| Gene Model ID | pfu_aug2.0_199.1_30409 |
|---|---|
| Locus | scaffold199.1 : 218261 ... 230184 : - |
| To GenomeBrowser | scaffold199.1:218261..230184 |
| Genes list of scaffold | scaffold199.1 |
| Synonym | pfu_aug1.0_43224.1_41284 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_199.1_30409.t1 | 1 | 1 | Neur_chan_LBD | 31 | 239 | 0.0 | 186.7 | 0.0 | 0.0 | 185.9 |
| pfu_aug2.0_199.1_30409.t1 | 1 | 1 | Neur_chan_memb | 247 | 547 | 4.4e-16 | 59.4 | 9.5e-20 | 7.0e-16 | 58.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_199.1_30409.t1 | gi|526117311|ref|NP_001267736.1| | neuronal acetylcholine receptor subunit alpha-9-like precursor [Aplysia californica] | 0.0 |
| pfu_aug2.0_199.1_30409.t1 | gi|676422647|ref|XP_009043986.1| | hypothetical protein LOTGIDRAFT_103111, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_199.1_30409.t1 | gi|260812453|ref|XP_002600935.1| | hypothetical protein BRAFLDRAFT_220220 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_199.1_30409.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_199.1_30409.t1 atgtggacattactactgacaatcataattcaacttactgtggaaaattctaatcaagtgacaattccaaaagtaaatgg tacagagaagatactgttccaagacttgttccaatcatacgatcagatccacagacctgtatcaaacagtagcgtagccg tcatggtggacttcggcatatcgttcaatcagctcttggacctggatgagaaaaagcaaattatgacgtcatcagtttgg attcacgagggctggacagacgaaggactccaatggaacccacgtgactatgatggtctgaacagtctggttgtctccgc caatcgtctctggcttccagacttattcatcttcaactctggaggaggtgaactcgatggttttatcaacgtaacaggga gtaaggttaagatcatgcatactggatacgtcacttgggtagttccattggttatcaagagcgcatgctccgtagatgtg acgtactttccttacgaccgacaacattgcgaaattcattttggctcttggatttatgacgtctctaagcttgatttacg gtgccatccggaaacgccgaatcttgacgagtatgtgctgaataatgaattcgaccttcaggattatggattatacagga ctatggtccatgaaagttgttgtccagggcatggggatcatccaatgataaatttcttcattcagctcaaacggaagtct atatactacgattatatcgtcatagcaccgacattaaatctctgtttcttgacattggtgaccttcatgcttccttgtca ccatggtgataaaattgccattggactaacagttttcctgacattgtatgtactccaactgttaatagcagaaaatgtac cggacacaaatacaacgcccatattaggaatatttatatttttggtcatgacgttaaactgtatatcactcatcttagca accatgatcatgagtgttaagaagagggccaaccttaaaccagttcctgaagtgccaaagtttgttttacggatttgtga gacttatctcagtcgcatcacgtgcaccagtgtcaagtcgcgattatacgaatataacgtctgcgatcagaatgaagaca tcagcgcatgcccggaagttgtggacgaaaaatcgttagaagcaaagaacaattccatttcacagtttcagttgcacgat tctgattcggaggaagggaaagacaaatatctttatgaaagcaactctgactttcagctatataatcacaattttcaaac agaagacacccttctacgtggccatagctctcaaagtgctttgcttgaccatgatcattcacagcttttagacacaccgg aggaaacagagaacaacactggcaggtgtcatagaaaaagaccatcgtacaagagggccattcatagaaatcctattctt gggcaaagtgaatcatccgacgatttattgaaaacaattgcgccagataggaccttaaaagagctcaccaaagacgaaat attggcgttatggaaatcttatcacagaaggaaaagagaatggtactttgtggcagagacaatggacaaatcatctttcc ttgtttatactttgagcatgttcatcactatattcactgttttagtattggtccccaatctccaataa |
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Protein
| Protein ID | pfu_aug2.0_199.1_30409.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_199.1_30409.t1 MWTLLLTIIIQLTVENSNQVTIPKVNGTEKILFQDLFQSYDQIHRPVSNSSVAVMVDFGISFNQLLDLDEKKQIMTSSVW IHEGWTDEGLQWNPRDYDGLNSLVVSANRLWLPDLFIFNSGGGELDGFINVTGSKVKIMHTGYVTWVVPLVIKSACSVDV TYFPYDRQHCEIHFGSWIYDVSKLDLRCHPETPNLDEYVLNNEFDLQDYGLYRTMVHESCCPGHGDHPMINFFIQLKRKS IYYDYIVIAPTLNLCFLTLVTFMLPCHHGDKIAIGLTVFLTLYVLQLLIAENVPDTNTTPILGIFIFLVMTLNCISLILA TMIMSVKKRANLKPVPEVPKFVLRICETYLSRITCTSVKSRLYEYNVCDQNEDISACPEVVDEKSLEAKNNSISQFQLHD SDSEEGKDKYLYESNSDFQLYNHNFQTEDTLLRGHSSQSALLDHDHSQLLDTPEETENNTGRCHRKRPSYKRAIHRNPIL GQSESSDDLLKTIAPDRTLKELTKDEILALWKSYHRRKREWYFVAETMDKSSFLVYTLSMFITIFTVLVLVPNLQ |
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