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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_1994.1_15344
Locus scaffold1994.1 : 92646 ... 104440 : +
To GenomeBrowser scaffold1994.1:92646..104440
Genes list of scaffold scaffold1994.1
Synonym pfu_aug1.0_13490.1_10611

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_1994.1_15344.t1 1 1 SAND 25 95 7.1e-23 80.1 3.9e-26 1.5e-22 79.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_1994.1_15344.t1 gi|742117153|ref|XP_010874071.1| PREDICTED: glucocorticoid modulatory element-binding protein 2 [Esox lucius] 7.0e-26
pfu_aug2.0_1994.1_15344.t1 gi|597742778|ref|XP_007233487.1| PREDICTED: glucocorticoid modulatory element-binding protein 2-like isoform X1 [Astyanax mexicanus] 8.0e-25
pfu_aug2.0_1994.1_15344.t1 gi|632939380|ref|XP_007909839.1| PREDICTED: glucocorticoid modulatory element-binding protein 2 isoform X1 [Callorhinchus milii] 1.0e-24
pfu_aug2.0_1994.1_15344.t1 gi|632939384|ref|XP_007909853.1| PREDICTED: glucocorticoid modulatory element-binding protein 2 isoform X3 [Callorhinchus milii] 1.0e-24
pfu_aug2.0_1994.1_15344.t1 gi|632939382|ref|XP_007909844.1| PREDICTED: glucocorticoid modulatory element-binding protein 2 isoform X2 [Callorhinchus milii] 2.0e-24

Transcript
Transcript IDpfu_aug2.0_1994.1_15344.t1
Definition-
>pfu_aug2.0_1994.1_15344.t1
atggagggagaagaagtttaccacagaggaggattcaaactgaagaaacctttacctaccctccctagtggtaagttaat
tgatgtcacttgtggaaacctgaaaggtcttcttcatcgagagctcttcttgtgcccaggtatcagaagggaatgtatcg
aatttgatggggaatttgtcacaccaaagaagtttatgtttatgggagagaaagctagactcaaagactggaaaaatgcc
gtaaggattcaaggagttcaagtcagacagagtgttaagggcggggagcacgtggtatgggacggtagtacttatccaca
ggaggaggacattgaggatgtcaagccagatatccaacagctacagttacagatgctaggtaatgtgagccaggctcaga
aacaaatacagagcacgctagccaccgcagccatcaaacaggtgccccttgtaccagtggctccatctacaatggtgtcg
tatcccgaaaaccagatggagacaactgatgaagaggataggctgttatggaaaggtattgtagagcttggcctagtgga
tgagtttttccgtgaaatcaaggcatcgttagatatacttaagaacaacatggtgcggagaatggttcctttagaggaca
ccaagaagatatctgtgattgtaaagcagttaggactaatgtcaaagctcaagtacaaattagaggctcaccagacggac
atggagagacagcgacttagactagatagggagatggaagaactccagagaaaggtcagagaatacgaattgaagaaaga
gatgctcaaaaggaaatccgactgtttcaatcagttaatagacatggctaagaaagagcaagatttcatgcctgaatcca
aacgactttgctcaaatggtccctctgaaattgtgttcccttcatcattccctgtcagaaacacagcatccgatagagga
gctgcatctgacagctctaacgacacaaattctaacacctctagatccacccctacagagtctcgccgtaaacagaaaac
taccgagaaaatagtcccaaattattccagtgaaagagacagtattgagctggagtacgtaaacggtcatgattatgtag
acgatattgaagaggaggaggaggatcctatcagcaccagtatatcatcatatcacgaatgtgtcccgagcagaaatgca
cgtaaagcgtcactgagggaagaaaccaagaaagatttatcagaagataagagtaatagagaggttgatgaagcaggaca
aggtgacatgaatagcaatgcaaccgataatgaaggcgtggggcaaggggatatgaatggcaacacaacagttatcgagg
aaaaaccacgcccctccggccctgctacaagagtaagaaaaccaggtcgtcctagaaagtctgtcaatgaataa

Protein
Protein IDpfu_aug2.0_1994.1_15344.t1
Definition-
>pfu_aug2.0_1994.1_15344.t1
MEGEEVYHRGGFKLKKPLPTLPSGKLIDVTCGNLKGLLHRELFLCPGIRRECIEFDGEFVTPKKFMFMGEKARLKDWKNA
VRIQGVQVRQSVKGGEHVVWDGSTYPQEEDIEDVKPDIQQLQLQMLGNVSQAQKQIQSTLATAAIKQVPLVPVAPSTMVS
YPENQMETTDEEDRLLWKGIVELGLVDEFFREIKASLDILKNNMVRRMVPLEDTKKISVIVKQLGLMSKLKYKLEAHQTD
MERQRLRLDREMEELQRKVREYELKKEMLKRKSDCFNQLIDMAKKEQDFMPESKRLCSNGPSEIVFPSSFPVRNTASDRG
AASDSSNDTNSNTSRSTPTESRRKQKTTEKIVPNYSSERDSIELEYVNGHDYVDDIEEEEEDPISTSISSYHECVPSRNA
RKASLREETKKDLSEDKSNREVDEAGQGDMNSNATDNEGVGQGDMNGNTTVIEEKPRPSGPATRVRKPGRPRKSVNE

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