Gene
| Gene Model ID | pfu_aug2.0_1999.1_32000 |
|---|---|
| Locus | scaffold1999.1 : 996 ... 36207 : + |
| To GenomeBrowser | scaffold1999.1:996..36207 |
| Genes list of scaffold | scaffold1999.1 |
| Synonym | pfu_aug1.0_146002.1_71850 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1999.1_32000.t1 | 3 | 1 | HYR | 134 | 213 | 7.1e-18 | 64.4 | 2.2e-17 | 1.7e-13 | 50.4 |
| pfu_aug2.0_1999.1_32000.t1 | 3 | 1 | Sushi | 218 | 274 | 4.3e-16 | 58.9 | 1.4e-10 | 1.0e-06 | 28.9 |
| pfu_aug2.0_1999.1_32000.t1 | 3 | 2 | HYR | 291 | 304 | 7.1e-18 | 64.4 | 1.7 | 13000.0 | -3.7 |
| pfu_aug2.0_1999.1_32000.t1 | 3 | 2 | Sushi | 295 | 336 | 4.3e-16 | 58.9 | 1.0e-09 | 7.7e-06 | 26.1 |
| pfu_aug2.0_1999.1_32000.t1 | 3 | 3 | HYR | 337 | 383 | 7.1e-18 | 64.4 | 2.8e-07 | 0.0021 | 18.0 |
| pfu_aug2.0_1999.1_32000.t1 | 3 | 3 | Sushi | 420 | 454 | 4.3e-16 | 58.9 | 1.1e-05 | 0.078 | 13.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1999.1_32000.t1 | gi|602647531|ref|XP_007430189.1| | PREDICTED: sushi repeat-containing protein SRPX2 [Python bivittatus] | 1.0e-20 |
| pfu_aug2.0_1999.1_32000.t1 | gi|564254135|ref|XP_006266062.1| | PREDICTED: sushi repeat-containing protein SRPX2 [Alligator mississippiensis] | 1.0e-20 |
Transcript
| Transcript ID | pfu_aug2.0_1999.1_32000.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1999.1_32000.t1 atgtattgtctatcaataatgccaaaattcgcagattaccttagcattatttatccttcggagcttgaagtcaaagaaac tacagagacaagtaattcaccattctatttgggcataatgttgtcctacgacactgatggtcacatgaaaacctcactct atgacaaacgtgacgacttcaatttcagcattacaaacttttcttttctgagaagcaacatcccttcatcgcctgcttat ggcgtgttcatatctcagttgatacgttatgccagagcagcttgccagtcgtcagatgtagcgaagatcaggagaaggag aggatggggtatatttgctgctattgttgctgttgctgtagtagtgggctgtttgatattctgtggagggaaaccacgag acaataccaagccaagtttaaactgtccaaaggataagtatgaaaatgctgaccggcttcaagtcaatacaattgtaacc tggacagaacccgtagcgcatgacgatcgtgatggtaacataacaccaaaaagaaagggcaaagcaccaggaaaacattt ttgggataataacacaatcagttatcatgccagggatagagctggaaatatggcgacctgctccttcaccattgtgataa acataattcaatgtccaaggctgaaccctgtacgggatggatacttcatatgccacccaggaggagattaccgttatggt tctacctgcagatttggctgttatgacggacatgaactgattggcgatagtttcttagaatgtttgcaaactggacagtg gtcagctgttataccatactgcaagaaggttacgtgcaatttacttgctcctgctctcaaccctatgggttacacttgca cggatgccaacaactacagatctttgtgtacatatggttgtcagtttggatacgatattatgtctggtatgactagagta agggtctgtaataagcatggtgattggcgtggtacactcccttcatgcgttgatatagaaccaccgaaaatatcacagtg tgagagggtcgtgtacaactatgccgacagaaattcaacaagtggaacagccgtctggtcagaaccaatagttactgaca accacgactcagcagtaacaatacgaaaaatagggagcattaacataggagacaatgtacagagcgcaacagagttatgt aagacggttccaaacgccccgaagaacggtgcattggcatgtgataattggcttggtggaaagttctgtcaaatgctctg taaagaaggctatgatgttcgaccaggatcgaatcattacgacatgctcgtttgtgataacagcggggagtggttaccta agaatgccttaccattggccaactgtgcaagttag |
|
Protein
| Protein ID | pfu_aug2.0_1999.1_32000.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1999.1_32000.t1 MYCLSIMPKFADYLSIIYPSELEVKETTETSNSPFYLGIMLSYDTDGHMKTSLYDKRDDFNFSITNFSFLRSNIPSSPAY GVFISQLIRYARAACQSSDVAKIRRRRGWGIFAAIVAVAVVVGCLIFCGGKPRDNTKPSLNCPKDKYENADRLQVNTIVT WTEPVAHDDRDGNITPKRKGKAPGKHFWDNNTISYHARDRAGNMATCSFTIVINIIQCPRLNPVRDGYFICHPGGDYRYG STCRFGCYDGHELIGDSFLECLQTGQWSAVIPYCKKVTCNLLAPALNPMGYTCTDANNYRSLCTYGCQFGYDIMSGMTRV RVCNKHGDWRGTLPSCVDIEPPKISQCERVVYNYADRNSTSGTAVWSEPIVTDNHDSAVTIRKIGSINIGDNVQSATELC KTVPNAPKNGALACDNWLGGKFCQMLCKEGYDVRPGSNHYDMLVCDNSGEWLPKNALPLANCAS |
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