Gene
| Gene Model ID | pfu_aug2.0_2.1_06676 |
|---|---|
| Locus | scaffold2.1 : 42936 ... 52272 : + |
| To GenomeBrowser | scaffold2.1:42936..52272 |
| Genes list of scaffold | scaffold2.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2.1_06676.t1 | 1 | 1 | PMP22_Claudin | 13 | 163 | 1.1e-13 | 51.1 | 1.8e-16 | 1.4e-13 | 50.8 |
| pfu_aug2.0_2.1_06676.t1 | 1 | 1 | Claudin_2 | 19 | 164 | 4.0e-15 | 55.9 | 7.5e-18 | 5.8e-15 | 55.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2.1_06676.t1 | gi|676493772|ref|XP_009066346.1| | hypothetical protein LOTGIDRAFT_169803 [Lottia gigantea] | 2.0e-08 |
| pfu_aug2.0_2.1_06676.t1 | gi|524893701|ref|XP_005103359.1| | PREDICTED: uncharacterized protein LOC101857424 [Aplysia californica] | 9.0e-07 |
| pfu_aug2.0_2.1_06676.t1 | gi|61806610|ref|NP_001013540.1| | lens intrinsic membrane protein 2.5 [Danio rerio] | 4.0e-06 |
| pfu_aug2.0_2.1_06676.t1 | gi|734613798|ref|XP_010734423.1| | PREDICTED: lens fiber membrane intrinsic protein-like [Larimichthys crocea] | 4.0e-06 |
| pfu_aug2.0_2.1_06676.t1 | gi|573907770|ref|XP_006641604.1| | PREDICTED: lens fiber membrane intrinsic protein-like [Lepisosteus oculatus] | 5.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_2.1_06676.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2.1_06676.t1 atgggattttctgatatcggtctatttgtcaaaataggatttttaacagcggtgataggaactataatatttatggttgg aatggccacacgaaaatggcaagaagctgacttgggagtggcaaaatattataatggtttatggaggaagtgtgtggaga cagctgcacagaccacgtgtgaggagaccgattccgataaggattggtccaaggcttgtattggattcatcatcatgact gtaatagcttgtgtggctggaatcacatcgctgatcttgtatttcatcaaatcggaccttaaagtgctacatatagtatc cattatcaccatttttgtcgcaggattatttgccattatcggagtaggtttgtatgccgccaattacgatgaagatgtac ccgctgtagtaaaagagcacctcaatctagcttggtccatatggcttacattagttggtggcattattctgataattgct agtgtattagtagctattgacaagtttataagtaaataa |
|
Protein
| Protein ID | pfu_aug2.0_2.1_06676.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2.1_06676.t1 MGFSDIGLFVKIGFLTAVIGTIIFMVGMATRKWQEADLGVAKYYNGLWRKCVETAAQTTCEETDSDKDWSKACIGFIIMT VIACVAGITSLILYFIKSDLKVLHIVSIITIFVAGLFAIIGVGLYAANYDEDVPAVVKEHLNLAWSIWLTLVGGIILIIA SVLVAIDKFISK |
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