Gene
| Gene Model ID | pfu_aug2.0_2.1_06692 |
|---|---|
| Locus | scaffold2.1 : 528627 ... 543690 : - |
| To GenomeBrowser | scaffold2.1:528627..543690 |
| Genes list of scaffold | scaffold2.1 |
| Synonym | pfu_aug1.0_14401.1_39608 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| retinoic acid receptor rxr-alpha | GO:0001890 GO:0004879 GO:0005634 GO:0006357 GO:0006950 GO:0007399 GO:0007507 GO:0007565 GO:0008134 GO:0008283 GO:0009888 GO:0010557 GO:0010628 GO:0016043 GO:0030154 GO:0030522 GO:0031328 GO:0032870 GO:0033273 GO:0035257 GO:0038023 GO:0043566 GO:0044212 GO:0044877 GO:0048523 GO:0048545 GO:0048732 GO:0097305 GO:2000026 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2.1_06692.t1 | 1 | 1 | zf-C4 | 172 | 240 | 2.8e-29 | 101.1 | 8.6e-33 | 4.3e-29 | 100.5 |
| pfu_aug2.0_2.1_06692.t1 | 1 | 1 | Hormone_recep | 315 | 486 | 1.9e-27 | 95.6 | 6.1e-31 | 3.0e-27 | 95.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2.1_06692.t1 | gi|676459932|ref|XP_009055459.1| | hypothetical protein LOTGIDRAFT_104793 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2.1_06692.t1 | gi|524887228|ref|XP_005100202.1| | PREDICTED: steroid hormone receptor ERR2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2.1_06692.t1 | gi|268053961|gb|ACY92467.1| | AmNR2 nuclear receptor [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_2.1_06692.t1 | gi|291234849|ref|XP_002737359.1| | PREDICTED: nuclear receptor subfamily 1 group D member 2 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_2.1_06692.t1 | gi|675885390|ref|XP_009028197.1| | hypothetical protein HELRODRAFT_103307 [Helobdella robusta] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2.1_06692.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2.1_06692.t1 atgtcggacgacataggagaacagttgagtgagcagcagttttatcgagaggagacacctcctgatgtcagccagtctgg tacagcgacagagttacctcaccatatcagaatgtatccagaggtcaaagctgagatgaaactggactgtatggaaatac caatacaaagcaccccggagacccagaaagatagcacaaacattcaaatgattcagaatttagcacaccaagtggcattc gatagaggcggggagggggattcaaatgtgccgattcagatgacaaattttagtgttccgcagccgggaagcctgatgtt aaatatagatcatatggactcggttaatggaggcgatggtgagaccgtgctcacgtcaccggatgtctcacagtcaggtt ctaatgtagtatcgaccacaccgattattcagattgaaactgtaggtgacagtagagataaggtcggagagggaagtagt ggtatgtaccctccgccagatgccattacacagccttgtatgatatgtggcgataagggatctggattccattactctgt gttttcgtgtgagggatgtaagggatttttcaaaaggagtgtgcagaaaaacttgatatattcttgtaaaaacgacgggg aatgctcaattaacaagttcactcgtaataactgtcagtactgtagatttgttaagtgttcacagatgggaatgaaaagg gaagctgtacgagaggatcgttcacccggaggcaagcatcgtcataaacgaccaaagctagacgaagtgacggcagtggt aaactcagagggcaatgttatatttcaactccctgcgacacaggattcaaacatatttgaggacaagatcgtggagggtc tcattgatgcacagccggatctcatcccaagggttgagggaaatttaggtttacagaatttgggaattaatcagttaatg caatatggatacgcagaactcaagtacattattgactgggccaaaagagtaccaggtttccccgagatatgtatagagga tcaaatggccctactcaaatcctccttcatggaactaaatgtgctcagactggcattcaggtcacaaaattcagatgatg aaataatgtttgctgaaggattaagagtccctgtagacctggctcagagaatgggatggggaaaagaactcatcaacgca accgtggaatttggtcaaagactcaaaattttgtcaatcgacaaaacagagtttgccatactgaacggaattgtactcac ctatccagatgctgctgggttaaaagaaaagcataaagtgacgttattacagaccaaaattctgaactcgctcggaaaat atcaacgttatcgcttccctgagaaccctaaacgttatggacagaccttgctacgtttaccatcattacggacagtcagt gccaaagctgcggagagattcttgtcgttaactctagatggcacagtgcaaataaatgatctcgtcttagaaatgataaa ttaa |
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Protein
| Protein ID | pfu_aug2.0_2.1_06692.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2.1_06692.t1 MSDDIGEQLSEQQFYREETPPDVSQSGTATELPHHIRMYPEVKAEMKLDCMEIPIQSTPETQKDSTNIQMIQNLAHQVAF DRGGEGDSNVPIQMTNFSVPQPGSLMLNIDHMDSVNGGDGETVLTSPDVSQSGSNVVSTTPIIQIETVGDSRDKVGEGSS GMYPPPDAITQPCMICGDKGSGFHYSVFSCEGCKGFFKRSVQKNLIYSCKNDGECSINKFTRNNCQYCRFVKCSQMGMKR EAVREDRSPGGKHRHKRPKLDEVTAVVNSEGNVIFQLPATQDSNIFEDKIVEGLIDAQPDLIPRVEGNLGLQNLGINQLM QYGYAELKYIIDWAKRVPGFPEICIEDQMALLKSSFMELNVLRLAFRSQNSDDEIMFAEGLRVPVDLAQRMGWGKELINA TVEFGQRLKILSIDKTEFAILNGIVLTYPDAAGLKEKHKVTLLQTKILNSLGKYQRYRFPENPKRYGQTLLRLPSLRTVS AKAAERFLSLTLDGTVQINDLVLEMIN |
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