Gene
| Gene Model ID | pfu_aug2.0_2.1_06709 |
|---|---|
| Locus | scaffold2.1 : 921989 ... 924552 : - |
| To GenomeBrowser | scaffold2.1:921989..924552 |
| Genes list of scaffold | scaffold2.1 |
| Synonym | pfu_aug1.0_497.1_15087 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| potassium voltage-gated channel subfamily c member 4- partial | GO:0005216 GO:0006811 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2.1_06709.t1 | 2 | 1 | Ion_trans | 4 | 18 | 1.2e-18 | 67.0 | 0.63 | 3100.0 | -2.8 |
| pfu_aug2.0_2.1_06709.t1 | 2 | 2 | Ion_trans | 110 | 288 | 1.2e-18 | 67.0 | 2.5e-22 | 1.2e-18 | 67.0 |
| pfu_aug2.0_2.1_06709.t1 | 1 | 1 | Ion_trans_2 | 217 | 292 | 1.3e-13 | 50.4 | 1.1e-16 | 5.5e-13 | 48.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2.1_06709.t1 | gi|597746443|ref|XP_007235234.1| | PREDICTED: potassium voltage-gated channel subfamily C member 1 isoform X2 [Astyanax mexicanus] | 1.0e-37 |
| pfu_aug2.0_2.1_06709.t1 | gi|597746441|ref|XP_007235233.1| | PREDICTED: potassium voltage-gated channel subfamily C member 1 isoform X1 [Astyanax mexicanus] | 2.0e-37 |
| pfu_aug2.0_2.1_06709.t1 | gi|704332938|ref|XP_010172729.1| | PREDICTED: potassium voltage-gated channel subfamily C member 4-like, partial [Caprimulgus carolinensis] | 2.0e-36 |
| pfu_aug2.0_2.1_06709.t1 | gi|704484956|ref|XP_010074257.1| | PREDICTED: potassium voltage-gated channel subfamily C member 4, partial [Pterocles gutturalis] | 3.0e-36 |
Transcript
| Transcript ID | pfu_aug2.0_2.1_06709.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2.1_06709.t1 atggctatcttctttgttttgttgtccatcatcaacctcgccgtcagtaccgtgccaagcttcaagagaacactctctgc ctgtcagctgattgactatatgacgtcaaagtacgatgtcatcgacgatgacgtgttggaatatcttaactccatatcat gctcagactatgcgtatgacgagtggcaggaagattatgagggatacatagagagatcagcatcgtcatggaatggaaca aattacgattattatgacgaagattacacgtttgatgtctcaaaaatatcacttccaaaaatagaaactagactacaaat cttcgaatatatcgagtttctgaccgttggtttctttaccattgaattactgctgaggctggtttgctgtccgaataagc tgacctatttcaagtcgattttgaactgtatagaccttgtggcactcctttctacatacatccatattttcatctcttac gtttttgtacatctcagatatgactcaatatttgttaagatacttcttaatatccaagcgtttagatcactccgcattat gagggttgtccaaaacgttggtgtgataatggtcctgttacacagcataagatcaagcgtaaaggagcttgtgatcctgt ttatgtacatgttaattgtggttaacctgttcgccaactttatgtatctggcagaaagtgatcaagctattacaagcatc cccaaagcttggtactggggaatagttactatgacaacgcttggttatggtgacctctacccgaaaacaactcatggccg atttatagcatgtctatgtgccgtttctggaattattctaattgctttggtcatccctgttgtcgttaataatttcatga ccttgtatgaggtcgcaaacatgaacgatagaattatgtccaagaaggaaggggacagaaaaattaagcgaacagtgtat gaaaagaaacaatcaaacaaagtgcaaccaattgatgacattaactttgaaaaaatgcgagtttaa |
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Protein
| Protein ID | pfu_aug2.0_2.1_06709.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2.1_06709.t1 MAIFFVLLSIINLAVSTVPSFKRTLSACQLIDYMTSKYDVIDDDVLEYLNSISCSDYAYDEWQEDYEGYIERSASSWNGT NYDYYDEDYTFDVSKISLPKIETRLQIFEYIEFLTVGFFTIELLLRLVCCPNKLTYFKSILNCIDLVALLSTYIHIFISY VFVHLRYDSIFVKILLNIQAFRSLRIMRVVQNVGVIMVLLHSIRSSVKELVILFMYMLIVVNLFANFMYLAESDQAITSI PKAWYWGIVTMTTLGYGDLYPKTTHGRFIACLCAVSGIILIALVIPVVVNNFMTLYEVANMNDRIMSKKEGDRKIKRTVY EKKQSNKVQPIDDINFEKMRV |
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