Gene
| Gene Model ID | pfu_aug2.0_2.1_06710 |
|---|---|
| Locus | scaffold2.1 : 941790 ... 952909 : - |
| To GenomeBrowser | scaffold2.1:941790..952909 |
| Genes list of scaffold | scaffold2.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2.1_06710.t1 | 3 | 1 | fn3 | 41 | 69 | 5.4e-07 | 29.6 | 0.01 | 30.0 | 4.8 |
| pfu_aug2.0_2.1_06710.t1 | 3 | 2 | fn3 | 113 | 148 | 5.4e-07 | 29.6 | 0.45 | 1300.0 | -0.5 |
| pfu_aug2.0_2.1_06710.t1 | 3 | 3 | fn3 | 248 | 298 | 5.4e-07 | 29.6 | 2.6e-08 | 7.6e-05 | 22.7 |
| pfu_aug2.0_2.1_06710.t1 | 3 | 1 | Laminin_EGF | 318 | 367 | 1.1e-14 | 54.0 | 3.3e-06 | 0.0098 | 15.7 |
| pfu_aug2.0_2.1_06710.t1 | 3 | 2 | Laminin_EGF | 376 | 424 | 1.1e-14 | 54.0 | 1.9e-07 | 0.00055 | 19.8 |
| pfu_aug2.0_2.1_06710.t1 | 3 | 3 | Laminin_EGF | 427 | 467 | 1.1e-14 | 54.0 | 7.7e-11 | 2.3e-07 | 30.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2.1_06710.t1 | gi|676491200|ref|XP_009065518.1| | hypothetical protein LOTGIDRAFT_236413 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2.1_06710.t1 | gi|524898904|ref|XP_005105895.1| | PREDICTED: uncharacterized protein LOC101847520 [Aplysia californica] | 2.0e-40 |
| pfu_aug2.0_2.1_06710.t1 | gi|676491203|ref|XP_009065519.1| | hypothetical protein LOTGIDRAFT_168974 [Lottia gigantea] | 6.0e-27 |
| pfu_aug2.0_2.1_06710.t1 | gi|260797158|ref|XP_002593571.1| | hypothetical protein BRAFLDRAFT_88482 [Branchiostoma floridae] | 2.0e-19 |
| pfu_aug2.0_2.1_06710.t1 | gi|524872988|ref|XP_005093248.1| | PREDICTED: laminin subunit alpha-2-like [Aplysia californica] | 2.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_2.1_06710.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2.1_06710.t1 atgcacacattgaaagcttctcagttatacctcctattcatactcttatcattgagtaatacaatcggattgaaatacgc aagcaatcaatatgcaagcaatgattatgtaaagcttcatgcaccgacggatgtgacagtggcttatgtggggacatcag atgtgttcttattctggtatgctcctactaactatgaagtccattgtgtagggaatatttctatgttagacgtacagcgt atacatgatgagttgaatggaagtttccctgatgacggtagatatataaacagaacattattcgacatttcaaaagttga tttgtcaagagttgatggaggagcagatacatattcaattattaaggatagttctaacaaaaccagcggagaaaattcat ctagtgatagtgttacagttgaaaacaatggtacaataacggggaattcaagcactatgaatgtaaacaaggatgacggt aatgttacatctacagagaatacagaagtttcaccatcaagtaactccagcagctcggaacataaagaaatgtcaccatc aggttccccagcacattcctcaaacaatacaggagtttccccaacaagcagcccagagcataaagaaatgtctccatctg gtgcaccaccacattcctccccagaacctgtcaaatgttcacataaacattccattaatagttatatacccagcacagat atcaagaatgttgccaggaaatcacaagccaggattctgtactataatgtcacctatggaccagcccaaggaggtaatgt gaaaagtcagagagtcagtgctactgaaacagattgtgtactaaagaacctgatgaccaacatggtgtacaagcttaatg tatccgtaaaatacgcctctggtgatgtcatggtgtcagatgaagtagaatttaagaccgtcaccacaaattgcctttgt aacaagatcggttcccaggaatcgagcctgaactgtgatacgaccagtttaatgcagcgtcacatgcggaggatctgtca ctgtaagacgggtcacgctgggatgttctgtcagcactgcgcgtttggctggtaccgaatgggacctgattacccatgtt acccttgcccttgtaaacctcaccattcaaacaccggctgccattttgaggagggcattttgttctgtgatgtttgtgcg ataggatacgccggtaacctatgtcaggaatgtgaccttggttactatagagacagaaggacacgcaggtgtagaagatg ccagtgcaatggaaatactccttactgcaactctataacaggagaatgtttcgagtgccagcacaatacagcgggatttg cttgtgacagatgtgcacatgactatgttggtgacgccaagcttaaaacttgtgttcataaatctgaattaagcagtgat gagcagtctctccccaaaggaactatagcggcagtttgtgtactggtgatcctgataatctgtggtattgtgggctttat tgtatacagaaagtataaaagctatcccatgccccgaccattctttacggtagagctaaaagacgatcacgagggagtta atttcagctccgtccctgatgatgacagacttgtttttaatgaggattcagatttttatgagaagcagggcggaaaaaga aatagagacggcacacagatttactcccctttgcaggagtctatgtga |
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Protein
| Protein ID | pfu_aug2.0_2.1_06710.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2.1_06710.t1 MHTLKASQLYLLFILLSLSNTIGLKYASNQYASNDYVKLHAPTDVTVAYVGTSDVFLFWYAPTNYEVHCVGNISMLDVQR IHDELNGSFPDDGRYINRTLFDISKVDLSRVDGGADTYSIIKDSSNKTSGENSSSDSVTVENNGTITGNSSTMNVNKDDG NVTSTENTEVSPSSNSSSSEHKEMSPSGSPAHSSNNTGVSPTSSPEHKEMSPSGAPPHSSPEPVKCSHKHSINSYIPSTD IKNVARKSQARILYYNVTYGPAQGGNVKSQRVSATETDCVLKNLMTNMVYKLNVSVKYASGDVMVSDEVEFKTVTTNCLC NKIGSQESSLNCDTTSLMQRHMRRICHCKTGHAGMFCQHCAFGWYRMGPDYPCYPCPCKPHHSNTGCHFEEGILFCDVCA IGYAGNLCQECDLGYYRDRRTRRCRRCQCNGNTPYCNSITGECFECQHNTAGFACDRCAHDYVGDAKLKTCVHKSELSSD EQSLPKGTIAAVCVLVILIICGIVGFIVYRKYKSYPMPRPFFTVELKDDHEGVNFSSVPDDDRLVFNEDSDFYEKQGGKR NRDGTQIYSPLQESM |
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