Gene
| Gene Model ID | pfu_aug2.0_2.1_06712 |
|---|---|
| Locus | scaffold2.1 : 972554 ... 980689 : - |
| To GenomeBrowser | scaffold2.1:972554..980689 |
| Genes list of scaffold | scaffold2.1 |
| Synonym | pfu_aug1.0_82810.1_56611 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transient receptor potential cation channel subfamily v member 3 | GO:0006811 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2.1_06712.t1 | 3 | 1 | Ank_2 | 43 | 139 | 5.7e-19 | 68.2 | 1.4e-10 | 3.1e-07 | 30.6 |
| pfu_aug2.0_2.1_06712.t1 | 5 | 1 | Ank_5 | 43 | 62 | 2.9e-18 | 65.4 | 1.3 | 2700.0 | -1.2 |
| pfu_aug2.0_2.1_06712.t1 | 6 | 1 | Ank_3 | 44 | 56 | 7.9e-14 | 50.4 | 2.8 | 6000.0 | -1.9 |
| pfu_aug2.0_2.1_06712.t1 | 5 | 1 | Ank | 45 | 56 | 4.3e-16 | 57.8 | 7.0 | 15000.0 | -4.1 |
| pfu_aug2.0_2.1_06712.t1 | 4 | 1 | Ank_4 | 70 | 88 | 6.1e-12 | 45.7 | 0.0063 | 13.0 | 6.4 |
| pfu_aug2.0_2.1_06712.t1 | 5 | 2 | Ank_5 | 72 | 100 | 2.9e-18 | 65.4 | 0.00043 | 0.91 | 9.8 |
| pfu_aug2.0_2.1_06712.t1 | 5 | 2 | Ank | 76 | 90 | 4.3e-16 | 57.8 | 0.0038 | 8.0 | 6.4 |
| pfu_aug2.0_2.1_06712.t1 | 6 | 2 | Ank_3 | 76 | 98 | 7.9e-14 | 50.4 | 0.0071 | 15.0 | 6.1 |
| pfu_aug2.0_2.1_06712.t1 | 5 | 3 | Ank_5 | 108 | 136 | 2.9e-18 | 65.4 | 3.3e-06 | 0.0071 | 16.5 |
| pfu_aug2.0_2.1_06712.t1 | 5 | 3 | Ank | 115 | 138 | 4.3e-16 | 57.8 | 1.3e-06 | 0.0027 | 17.4 |
| pfu_aug2.0_2.1_06712.t1 | 6 | 3 | Ank_3 | 115 | 138 | 7.9e-14 | 50.4 | 2.6e-05 | 0.054 | 13.7 |
| pfu_aug2.0_2.1_06712.t1 | 4 | 2 | Ank_4 | 116 | 135 | 6.1e-12 | 45.7 | 0.00069 | 1.5 | 9.4 |
| pfu_aug2.0_2.1_06712.t1 | 3 | 2 | Ank_2 | 159 | 206 | 5.7e-19 | 68.2 | 8.5e-10 | 1.8e-06 | 28.1 |
| pfu_aug2.0_2.1_06712.t1 | 5 | 4 | Ank_5 | 163 | 200 | 2.9e-18 | 65.4 | 1.2e-06 | 0.0026 | 17.9 |
| pfu_aug2.0_2.1_06712.t1 | 5 | 4 | Ank | 163 | 193 | 4.3e-16 | 57.8 | 4.8e-07 | 0.001 | 18.7 |
| pfu_aug2.0_2.1_06712.t1 | 6 | 4 | Ank_3 | 163 | 189 | 7.9e-14 | 50.4 | 5.1e-06 | 0.011 | 15.9 |
| pfu_aug2.0_2.1_06712.t1 | 4 | 3 | Ank_4 | 166 | 204 | 6.1e-12 | 45.7 | 3.7e-06 | 0.0079 | 16.6 |
| pfu_aug2.0_2.1_06712.t1 | 6 | 5 | Ank_3 | 195 | 207 | 7.9e-14 | 50.4 | 1.7 | 3600.0 | -1.2 |
| pfu_aug2.0_2.1_06712.t1 | 4 | 4 | Ank_4 | 264 | 288 | 6.1e-12 | 45.7 | 0.0043 | 9.1 | 6.9 |
| pfu_aug2.0_2.1_06712.t1 | 5 | 5 | Ank_5 | 266 | 295 | 2.9e-18 | 65.4 | 1.5e-05 | 0.032 | 14.4 |
| pfu_aug2.0_2.1_06712.t1 | 5 | 5 | Ank | 269 | 289 | 4.3e-16 | 57.8 | 0.0005 | 1.1 | 9.2 |
| pfu_aug2.0_2.1_06712.t1 | 3 | 3 | Ank_2 | 270 | 289 | 5.7e-19 | 68.2 | 0.0082 | 17.0 | 5.7 |
| pfu_aug2.0_2.1_06712.t1 | 6 | 6 | Ank_3 | 270 | 289 | 7.9e-14 | 50.4 | 0.003 | 6.4 | 7.3 |
| pfu_aug2.0_2.1_06712.t1 | 1 | 1 | Ion_trans | 386 | 478 | 1.8e-07 | 30.6 | 9.8e-11 | 2.1e-07 | 30.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2.1_06712.t1 | gi|524898541|ref|XP_005105718.1| | PREDICTED: uncharacterized protein LOC101846237 [Aplysia californica] | 0.0 |
| pfu_aug2.0_2.1_06712.t1 | gi|556998838|ref|XP_006002549.1| | PREDICTED: transient receptor potential cation channel subfamily V member 6-like [Latimeria chalumnae] | 3.0e-18 |
| pfu_aug2.0_2.1_06712.t1 | gi|395529431|ref|XP_003766817.1| | PREDICTED: transient receptor potential cation channel subfamily V member 3 [Sarcophilus harrisii] | 4.0e-18 |
| pfu_aug2.0_2.1_06712.t1 | gi|395748366|ref|XP_003778760.1| | PREDICTED: LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily V member 3 [Pongo abelii] | 7.0e-18 |
| pfu_aug2.0_2.1_06712.t1 | gi|544496299|ref|XP_005582571.1| | PREDICTED: transient receptor potential cation channel subfamily V member 3 isoform X1 [Macaca fascicularis] | 9.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_2.1_06712.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2.1_06712.t1 atgtcttactataaatcagagccaaagtatccagtaccaacgaaaaacatggagaggcgacgaatgaggccattcaagaa catgttggcgagaggtgatccggattattacaaacaaatatctaaatgcataaaaaacgggaacaaggagatgttcacca gtctactgacagaactgaatacgaacggacagagcgaaaaactggcgacatatgacgaaggagagggagaaacactgctt catgttgccgtcaaatatcaagatgataactatttcgtggaaaatttgatcaatgaatgttcgctactcctaaaaaaggc acgggaaatgtcgagtgatttccatggacaaacgccactacacgttgccattacaaagggaaacttgggagcagttagct tgatgattgaaaaatccggtccggtcaaaacggatctccttcacacatgcgcaaccgggaaaagattcgtcaatactgta atgatgggagagctgcctctaaccgttgctgcattgaagggcaattttgaaattgttgatatactaattgaaaacgaggc tgatttaagtaggcaaaaccatcatggtgacaccgtctttcactccttgattaaatacgctgctatatatccagagaaaa taacacctgttttgaacatgatgagtaatcttaaccatttgattgaaggtttaagtaatgatcgagagacagcggacgat ccggatcgtgatgttgatgatcctaattgtttcacttacacatatcatttctcttacatctggttcctgcaaaaccatga gtgtttgacgccgcttcaacttgcagcaaaacatggtcttagtgacattttcgaatatattttaaacattaaagatgttt actgtattcttagcacacatgatggcctttttgacgtaaaacaatacgacatttcagaaatcgacactgtctgtaaccat aaaacctaccacaaccagaaagctctgacaactagaccatcagtcagaatatcaccagatcgtcttgaagcgatagctga tgagtggaatgagagtatatgtctagtgatagccttgatatgtggctggtggttctgtgtcttcttcctcagccctttcc cgatgttcagtttcttcgctgagatggttaaacgtgtgatacttggagatatgctgcgttttggattgatcattacgttt gagctcattgcctttacggctgggatgtttatcgtcttcagaggaagtcctgttgaaaacgaaggattccaaagtttcgg agacacgatgctcactatgtttcggctagggataggaatcggggacatagagatcctttactcagcaagaactgtttggg cagctataactttgtttattctatttgttatctttacttatctactgatgttaaacgcactcatcgctatgatgtcacag acatgcgcatttgtgttagaggaacggtatccacaatggcgaattcagcagttgtccgttatcttatttcttgaagatat tttctcgtttacgttttgttgtaaattttgtcgatgttgtccaggggaacaaaaagtcacaaaaggattcgacccaaaga ccaaacattataagtccataccaagatacttcttagagattcattccttacaaacagagtatgcgactgaagaggataag gaaagagtgaaaaagaagaagagccaagatcagtttaacataaatcaaatggagatggatgattctctacagaaaactat tatgcttaacgattctcaagaaatagattcactatcattggatgacactggtgcatacaaatacccaagatggcatcttc agcatgttgttgatagggcacggaactttcgtcagtcaaagtccatcagacgacagagatcaaagagagaaaaactctct ccaaaatcatcaaatcttgatactttacaggaggagttttctttcactgaggattcgtcttcacagagacataatccaaa acacgacgtaaggaaagtatcgtccaaaacaccagacgtcgtacactctgacaggagcccagttcctaaacgaagcaaag acttgaacagaagacgttacaaatctgagaatttgcatgaaaaggaaaccaggagcacagggatacaacattccccactc acagacccagaacctatatcctactccgttcctgcagatcttatgaatatggttaaattaccaaacggtctgattggcaa accagcttgctcagagcaagagggccctgggcccgcttgctcgcttcgcttcgcttaa |
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Protein
| Protein ID | pfu_aug2.0_2.1_06712.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2.1_06712.t1 MSYYKSEPKYPVPTKNMERRRMRPFKNMLARGDPDYYKQISKCIKNGNKEMFTSLLTELNTNGQSEKLATYDEGEGETLL HVAVKYQDDNYFVENLINECSLLLKKAREMSSDFHGQTPLHVAITKGNLGAVSLMIEKSGPVKTDLLHTCATGKRFVNTV MMGELPLTVAALKGNFEIVDILIENEADLSRQNHHGDTVFHSLIKYAAIYPEKITPVLNMMSNLNHLIEGLSNDRETADD PDRDVDDPNCFTYTYHFSYIWFLQNHECLTPLQLAAKHGLSDIFEYILNIKDVYCILSTHDGLFDVKQYDISEIDTVCNH KTYHNQKALTTRPSVRISPDRLEAIADEWNESICLVIALICGWWFCVFFLSPFPMFSFFAEMVKRVILGDMLRFGLIITF ELIAFTAGMFIVFRGSPVENEGFQSFGDTMLTMFRLGIGIGDIEILYSARTVWAAITLFILFVIFTYLLMLNALIAMMSQ TCAFVLEERYPQWRIQQLSVILFLEDIFSFTFCCKFCRCCPGEQKVTKGFDPKTKHYKSIPRYFLEIHSLQTEYATEEDK ERVKKKKSQDQFNINQMEMDDSLQKTIMLNDSQEIDSLSLDDTGAYKYPRWHLQHVVDRARNFRQSKSIRRQRSKREKLS PKSSNLDTLQEEFSFTEDSSSQRHNPKHDVRKVSSKTPDVVHSDRSPVPKRSKDLNRRRYKSENLHEKETRSTGIQHSPL TDPEPISYSVPADLMNMVKLPNGLIGKPACSEQEGPGPACSLRFA |
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