Gene
| Gene Model ID | pfu_aug2.0_2004.1_15347 |
|---|---|
| Locus | scaffold2004.1 : 25466 ... 32959 : + |
| To GenomeBrowser | scaffold2004.1:25466..32959 |
| Genes list of scaffold | scaffold2004.1 |
| Synonym | pfu_aug1.0_9091.1_67985 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| myosin regulatory light chain (n-terminus) | GO:0005509 GO:0045454 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2004.1_15347.t1 | 3 | 1 | EF-hand_6 | 28 | 57 | 6.4e-13 | 47.4 | 2.1e-10 | 4.0e-07 | 29.3 |
| pfu_aug2.0_2004.1_15347.t1 | 4 | 1 | EF-hand_1 | 28 | 56 | 1.3e-12 | 46.0 | 6.8e-11 | 1.3e-07 | 30.4 |
| pfu_aug2.0_2004.1_15347.t1 | 2 | 1 | EF-hand_7 | 29 | 69 | 3.1e-14 | 52.8 | 4.7e-10 | 8.8e-07 | 28.9 |
| pfu_aug2.0_2004.1_15347.t1 | 2 | 2 | EF-hand_7 | 98 | 157 | 3.1e-14 | 52.8 | 1.4e-08 | 2.7e-05 | 24.2 |
| pfu_aug2.0_2004.1_15347.t1 | 3 | 2 | EF-hand_6 | 98 | 124 | 6.4e-13 | 47.4 | 1.7e-06 | 0.0031 | 17.2 |
| pfu_aug2.0_2004.1_15347.t1 | 4 | 2 | EF-hand_1 | 98 | 124 | 1.3e-12 | 46.0 | 1.2e-06 | 0.0023 | 17.1 |
| pfu_aug2.0_2004.1_15347.t1 | 4 | 3 | EF-hand_1 | 131 | 139 | 1.3e-12 | 46.0 | 1.6 | 3000.0 | -2.0 |
| pfu_aug2.0_2004.1_15347.t1 | 3 | 3 | EF-hand_6 | 146 | 158 | 6.4e-13 | 47.4 | 0.53 | 990.0 | 0.1 |
| pfu_aug2.0_2004.1_15347.t1 | 4 | 4 | EF-hand_1 | 146 | 158 | 1.3e-12 | 46.0 | 0.11 | 200.0 | 1.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2004.1_15347.t1 | gi|526117405|ref|NP_001267760.1| | myosin regulatory light chain (N-terminus) [Aplysia californica] | 0.0 |
| pfu_aug2.0_2004.1_15347.t1 | gi|684400520|ref|XP_009172858.1| | hypothetical protein T265_08714 [Opisthorchis viverrini] | 0.0 |
| pfu_aug2.0_2004.1_15347.t1 | gi|676472818|ref|XP_009059614.1| | hypothetical protein LOTGIDRAFT_164867 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2004.1_15347.t1 | gi|676472822|ref|XP_009059615.1| | hypothetical protein LOTGIDRAFT_124501 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2004.1_15347.t1 | gi|72007358|ref|XP_783666.1| | PREDICTED: myosin regulatory light chain 12A [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2004.1_15347.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2004.1_15347.t1 atgtccgacgatgcacagcaacagaaggcaagagccgcaacatcaaatgtgttgaccaagttcaatcagaaagtcatcca ggaaatgaaagaggccttcacaatgattgatgtgaacagagatgggtttatcgacctcaacgatctcaaagaaatgttct cgtcattaggaaggacgccagatgataaagacttgaaagctatgctcgcagaggcacctggtccattaaacttcacaatg ttcctgtcactcttcagtgaaaagttgagcggtactgatccagaagacaccatcagacaagcattcaaaatgtttgacaa tgaaggcaaaggcaaactaccagaagaatatattaaagatttattagaaaacatgggtgataacttcacgaaagacgaga tgaggcaaacattcaaagaagcacctcttgaaggaggaaaattagattatgaaaaattcgtagcaattatcaagggtagt gagcaggatgacgctgcgtaa |
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Protein
| Protein ID | pfu_aug2.0_2004.1_15347.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2004.1_15347.t1 MSDDAQQQKARAATSNVLTKFNQKVIQEMKEAFTMIDVNRDGFIDLNDLKEMFSSLGRTPDDKDLKAMLAEAPGPLNFTM FLSLFSEKLSGTDPEDTIRQAFKMFDNEGKGKLPEEYIKDLLENMGDNFTKDEMRQTFKEAPLEGGKLDYEKFVAIIKGS EQDDAA |
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