Gene
| Gene Model ID | pfu_aug2.0_201.1_03787 |
|---|---|
| Locus | scaffold201.1 : 187144 ... 206359 : + |
| To GenomeBrowser | scaffold201.1:187144..206359 |
| Genes list of scaffold | scaffold201.1 |
| Synonym | pfu_aug1.0_811.1_58260 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| homeobox protein nkx- | GO:0005634 GO:0010453 GO:0021522 GO:0031018 GO:0035883 GO:0043565 GO:0045596 GO:0045597 GO:0045685 GO:0048665 GO:0048709 GO:0060850 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_201.1_03787.t1 | 2 | 1 | Homeobox | 14 | 24 | 4.6e-21 | 74.2 | 1.5 | 7400.0 | -3.4 |
| pfu_aug2.0_201.1_03787.t1 | 2 | 2 | Homeobox | 167 | 223 | 4.6e-21 | 74.2 | 1.2e-24 | 6.0e-21 | 73.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_201.1_03787.t1 | gi|524865811|ref|XP_005089732.1| | PREDICTED: homeobox protein Nkx-6.2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_201.1_03787.t1 | gi|676446173|ref|XP_009050993.1| | hypothetical protein LOTGIDRAFT_114513 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_201.1_03787.t1 | gi|557003274|ref|XP_006003775.1| | PREDICTED: homeobox protein Nkx-6.2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_201.1_03787.t1 | gi|557283605|ref|XP_006024676.1| | PREDICTED: homeobox protein Nkx-6.2 [Alligator sinensis] | 0.0 |
| pfu_aug2.0_201.1_03787.t1 | gi|527251820|ref|XP_005144209.1| | PREDICTED: homeobox protein Nkx-6.2 [Melopsittacus undulatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_201.1_03787.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_201.1_03787.t1 atgttggacttttgttctaatgactcgccgacgactggctaccaccagaatcccagtcctacgacacagatgtccatggc ctccctcctcaatacaatgaatatgagtatggatagttccggacgccaacctgccttcgtcctcagcagtcctcccctgg ctgccctacataacatgaccgagatgaaggctccgtcaacctcctcctccgccgccgctgccaattttctgacctccgcc ggttatcagcaatccttaaaacatttgtccgctaatggaacaccacatgggattcaggacattttaaatagaccacagat tcatgctttgggactgtcaagactaaatgcagcaggaatgtatctaaatcagcaagcaagatttcctaaattagcagaat tgcccggtagaccacctatatactggcctggacttctcaatcaaaccaactggagacctaattcttctacagtagtagtg gacaaggacggaaaaaagaaacatacaagaccgacattttccggacaacagatttttgcccttgagaaaacatttgagca gacaaaatatctggcgggtccagaaagagcccgactggcatacgccctgggaatgtcagaaagtcaagttaaggtatggt tccaaaatagacgaacgaaatggcgtaaaaagcatgcagcagaaatggcttcggcaaagaagaaacaagaacaagcggag gaactagatgaaaattccgatatggacgacgatcagtcgtcggacagtagtaaattacacgaccacatgtcggaatattt ggagaacgcagtttctttaaaatccgatgaatgtttgcttttagttttaaatgaggtacggactaaacaaattgaaaacg aggctttgaaaaggagcaatatggagattagaatgtactatcatttatga |
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Protein
| Protein ID | pfu_aug2.0_201.1_03787.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_201.1_03787.t1 MLDFCSNDSPTTGYHQNPSPTTQMSMASLLNTMNMSMDSSGRQPAFVLSSPPLAALHNMTEMKAPSTSSSAAAANFLTSA GYQQSLKHLSANGTPHGIQDILNRPQIHALGLSRLNAAGMYLNQQARFPKLAELPGRPPIYWPGLLNQTNWRPNSSTVVV DKDGKKKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYALGMSESQVKVWFQNRRTKWRKKHAAEMASAKKKQEQAE ELDENSDMDDDQSSDSSKLHDHMSEYLENAVSLKSDECLLLVLNEVRTKQIENEALKRSNMEIRMYYHL |
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