Gene
| Gene Model ID | pfu_aug2.0_2015.1_18645 |
|---|---|
| Locus | scaffold2015.1 : 26881 ... 36195 : - |
| To GenomeBrowser | scaffold2015.1:26881..36195 |
| Genes list of scaffold | scaffold2015.1 |
| Synonym | pfu_aug1.0_2813.1_59038 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras-related protein rab-7a | GO:0003924 GO:0005525 GO:0005764 GO:0005770 GO:0005794 GO:0006622 GO:0006913 GO:0007174 GO:0007264 GO:0008333 GO:0019003 GO:0034045 GO:0045022 GO:0045335 GO:0070062 GO:0090383 GO:0090385 GO:2000785 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2015.1_18645.t1 | 1 | 1 | Arf | 8 | 140 | 2.6e-13 | 49.5 | 5.3e-16 | 3.0e-13 | 49.3 |
| pfu_aug2.0_2015.1_18645.t1 | 1 | 1 | Ras | 10 | 150 | 0.0 | 156.5 | 0.0 | 0.0 | 156.3 |
| pfu_aug2.0_2015.1_18645.t1 | 1 | 1 | Miro | 10 | 128 | 3.7e-19 | 69.3 | 8.0e-22 | 4.6e-19 | 69.0 |
| pfu_aug2.0_2015.1_18645.t1 | 1 | 1 | MMR_HSR1 | 10 | 95 | 3.1e-07 | 30.3 | 6.9e-10 | 4.0e-07 | 30.0 |
| pfu_aug2.0_2015.1_18645.t1 | 1 | 1 | Gtr1_RagA | 10 | 131 | 9.2e-07 | 28.2 | 1.9e-09 | 1.1e-06 | 27.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2015.1_18645.t1 | gi|676495767|ref|XP_009066993.1| | hypothetical protein LOTGIDRAFT_223383 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2015.1_18645.t1 | gi|524878506|ref|XP_005095937.1| | PREDICTED: ras-related protein Rab-7a-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_2015.1_18645.t1 | gi|524878504|ref|XP_005095936.1| | PREDICTED: ras-related protein Rab-7a-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_2015.1_18645.t1 | gi|573874535|ref|XP_006625649.1| | PREDICTED: ras-related protein Rab-7a-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_2015.1_18645.t1 | gi|632946407|ref|XP_007888542.1| | PREDICTED: ras-related protein Rab-7a [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2015.1_18645.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2015.1_18645.t1 atggcttcgaggaagaaggttttgttgaaagtaataatattaggtgacagtggtgtaggtaagacatcacttatgaacca gtatgtgaacaaaaagttcagtaatcaatataaggccaccattggagcagatttccttaccaaagaagtcatggtagaag ataggctagtcactatgcagatatgggacacagcgggccaggagaggtttcagagtttaggcgtggctttctacaggggt gcagactgttgtgtattggtgtttgatgttaccatgccaaatacattcaaatcactagacagctggagagatgagtttct tatacaagcaagtccaagggatccagaaaactttccttttgttgttataggaaataaaatagatttggaaaacagggcgg taactaagcattatcacaaagcttacaaaccacctgttagctttatttatttattgattgcaagctataggacatattga |
|
Protein
| Protein ID | pfu_aug2.0_2015.1_18645.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2015.1_18645.t1 MASRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVEDRLVTMQIWDTAGQERFQSLGVAFYRG ADCCVLVFDVTMPNTFKSLDSWRDEFLIQASPRDPENFPFVVIGNKIDLENRAVTKHYHKAYKPPVSFIYLLIASYRTY |
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