Gene
| Gene Model ID | pfu_aug2.0_2015.1_18648 |
|---|---|
| Locus | scaffold2015.1 : 69246 ... 88381 : + |
| To GenomeBrowser | scaffold2015.1:69246..88381 |
| Genes list of scaffold | scaffold2015.1 |
| Synonym | pfu_aug1.0_9628.1_60637 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2015.1_18648.t1 | 2 | 1 | C2 | 23 | 109 | 2.8e-28 | 97.5 | 2.4e-15 | 1.2e-11 | 44.2 |
| pfu_aug2.0_2015.1_18648.t1 | 2 | 2 | C2 | 155 | 239 | 2.8e-28 | 97.5 | 1.6e-17 | 7.8e-14 | 51.2 |
| pfu_aug2.0_2015.1_18648.t1 | 1 | 1 | Copine | 320 | 460 | 0.0 | 177.5 | 0.0 | 0.0 | 176.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2015.1_18648.t1 | gi|524885465|ref|XP_005099340.1| | PREDICTED: copine-8-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2015.1_18648.t1 | gi|676495758|ref|XP_009066990.1| | hypothetical protein LOTGIDRAFT_198063 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2015.1_18648.t1 | gi|181330519|ref|NP_001116758.1| | uncharacterized protein LOC568003 [Danio rerio] | 0.0 |
| pfu_aug2.0_2015.1_18648.t1 | gi|573880571|ref|XP_006628489.1| | PREDICTED: copine-5-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_2015.1_18648.t1 | gi|688567730|ref|XP_009302217.1| | PREDICTED: uncharacterized protein LOC568003 isoform X2 [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2015.1_18648.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2015.1_18648.t1 atggatggcatgtcaaattttcaaccaggaacaggtgttgctcctgcaactttggtggaaatttcggtttcttgtcggaa acttatagatgctgatgtattttccaagtcagatccaatgtgtgttttattcactatggatcaacaatcaaagtcatgga gagaatttggtcgaacagaaattatctggaataacttgaatccagattttgtgaagaagtttgtgatgcactactatttt gaacaaagtcagaagctgaagtttgaaatttatgatgttgattccaaaagtgcagatctgtccaaacatgatttcttagg acgtatggaatgttccttaggagaaattgtgtcctcagggtcaaggatgcagagaagattgagcggaccaaagaaggaca gtgggcatataatagtgggagctgaggagctcagcagctgtaaggaacaagttcacatgcagttctgtgcacataaactt gacaagaaggatttctttggtaaatcagatccgtttctgacattctacagggcaaacgaagatggatcgtacacagttgt acataggacagaggttataaagaaaacgttaaatccaacatggaggccatttactattcaggtccgagctttatgtaacg gcgactatgacaggagcataaaagttgagtgctatgactgggatgcagatggtggccatgactttattggggagtttatg acgacgttacgtgagttgacgaggggtccaagtccgcagaacgtgtttgagtgcataagtccaaaaaagaaagcaaagaa aggatctaaatacaagaattcaggaactgttgagttgatgagctgtcgggttgagaaggtttacacattcttggactatg tcagaggggggacacagattcattgtaccttttctgttgatttcaccgcgtcaaacggagatccaaagacttcaggatct ttacattacatgaacccttacagacctaacccataccaaaatgctctacgtgccgtaggaaacatcatacaggactatga tacagataagctgtttcctgcccttggttttggtgcccggctgccaccagatggagttgtatcacatgagttcgcattga acgggaatcctaacaacccttactgccagggaatagacggtgtgttagatgcctataacaaggctctatatagcgtacaa ctctacggtccgacaaactttgctccctgtataaaccatgttgccaaatttgccgcccagcgtcgtgagggtaatgatta tttcatactgctgatcatcactgacgacatgccacaaacctctgaggccattgttagtgcagccagtcttccgatgtcaa taattataataggtgtgggagatgctgatttcgatgcaatggaggtattagatggagatgatgtccgtctgtcctccagg gggcgctatgcagaaagggacatcgttcagtttgtaccgatgcgtgacttccagggacgagcgggtgataatccggccac agtacaggccatgttagctaaggaggtcttagaggagattccagaccagttcttgtcttttatgaaatcccacaatatca aacctaaacctcctttacaaagacagcttacaatatcatctgtgacgtcactacctgcttcggagcggtaa |
|
Protein
| Protein ID | pfu_aug2.0_2015.1_18648.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2015.1_18648.t1 MDGMSNFQPGTGVAPATLVEISVSCRKLIDADVFSKSDPMCVLFTMDQQSKSWREFGRTEIIWNNLNPDFVKKFVMHYYF EQSQKLKFEIYDVDSKSADLSKHDFLGRMECSLGEIVSSGSRMQRRLSGPKKDSGHIIVGAEELSSCKEQVHMQFCAHKL DKKDFFGKSDPFLTFYRANEDGSYTVVHRTEVIKKTLNPTWRPFTIQVRALCNGDYDRSIKVECYDWDADGGHDFIGEFM TTLRELTRGPSPQNVFECISPKKKAKKGSKYKNSGTVELMSCRVEKVYTFLDYVRGGTQIHCTFSVDFTASNGDPKTSGS LHYMNPYRPNPYQNALRAVGNIIQDYDTDKLFPALGFGARLPPDGVVSHEFALNGNPNNPYCQGIDGVLDAYNKALYSVQ LYGPTNFAPCINHVAKFAAQRREGNDYFILLIITDDMPQTSEAIVSAASLPMSIIIIGVGDADFDAMEVLDGDDVRLSSR GRYAERDIVQFVPMRDFQGRAGDNPATVQAMLAKEVLEEIPDQFLSFMKSHNIKPKPPLQRQLTISSVTSLPASER |
|