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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_2020.1_01952
Locus scaffold2020.1 : 31592 ... 53295 : -
To GenomeBrowser scaffold2020.1:31592..53295
Genes list of scaffold scaffold2020.1
Synonym pfu_aug1.0_18.1_14708

Manual annotation
Annotation by Blast2GO
Annotation GO
e3 ubiquitin-protein ligase nrdp1 GO:0004842 GO:0005126 GO:0008270 GO:0010468 GO:0016567 GO:0016881 GO:0031386 GO:0045595 GO:0048518 GO:0048523 GO:1902531 GO:1903706 GO:2000377

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_2020.1_01952.t1 1 1 U-box 14 69 1.8e-06 27.7 7.2e-09 4.9e-06 26.4
pfu_aug2.0_2020.1_01952.t1 1 1 zf-RING_6 16 56 6.7e-07 28.9 2.8e-09 1.9e-06 27.5
pfu_aug2.0_2020.1_01952.t1 2 1 zf-C3HC4_3 16 61 6.0e-06 25.8 8.8e-09 6.0e-06 25.8
pfu_aug2.0_2020.1_01952.t1 1 1 zf-C3HC4 18 54 1.1e-09 37.7 4.0e-12 2.7e-09 36.5
pfu_aug2.0_2020.1_01952.t1 1 1 zf-RING_2 18 55 2.1e-09 37.0 8.4e-12 5.7e-09 35.6
pfu_aug2.0_2020.1_01952.t1 1 1 zf-C3HC4_2 18 55 8.4e-09 35.3 3.6e-11 2.4e-08 33.8
pfu_aug2.0_2020.1_01952.t1 2 1 zf-rbx1 18 57 4.2e-06 26.7 7.3e-09 4.9e-06 26.5
pfu_aug2.0_2020.1_01952.t1 1 1 zf-C3HC4_4 18 50 5.5e-06 26.1 1.8e-08 1.2e-05 25.0
pfu_aug2.0_2020.1_01952.t1 2 1 zf-RING_5 18 57 7.7e-06 25.5 1.1e-08 7.7e-06 25.5
pfu_aug2.0_2020.1_01952.t1 2 2 zf-rbx1 72 97 4.2e-06 26.7 1.7 1100.0 -0.3
pfu_aug2.0_2020.1_01952.t1 2 2 zf-RING_5 81 97 7.7e-06 25.5 8.9 6000.0 -3.0
pfu_aug2.0_2020.1_01952.t1 2 2 zf-C3HC4_3 95 101 6.0e-06 25.8 4.6 3100.0 -2.1
pfu_aug2.0_2020.1_01952.t1 1 1 USP8_interact 100 278 0.0 294.0 0.0 0.0 293.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_2020.1_01952.t1 gi|676478002|ref|XP_009061293.1| hypothetical protein LOTGIDRAFT_219611 [Lottia gigantea] 0.0
pfu_aug2.0_2020.1_01952.t1 gi|524881773|ref|XP_005097536.1| PREDICTED: E3 ubiquitin-protein ligase NRDP1-like [Aplysia californica] 0.0
pfu_aug2.0_2020.1_01952.t1 gi|91078878|ref|XP_972869.1| PREDICTED: E3 ubiquitin-protein ligase NRDP1 isoform X2 [Tribolium castaneum] 0.0
pfu_aug2.0_2020.1_01952.t1 gi|557324486|ref|XP_006035277.1| PREDICTED: E3 ubiquitin-protein ligase NRDP1 [Alligator sinensis] 0.0
pfu_aug2.0_2020.1_01952.t1 gi|632986940|ref|XP_007910519.1| PREDICTED: E3 ubiquitin-protein ligase NRDP1 [Callorhinchus milii] 0.0

Transcript
Transcript IDpfu_aug2.0_2020.1_01952.t1
Definition-
>pfu_aug2.0_2020.1_01952.t1
atgggatatgaaacaaaccgttttcaaggtgacgttgatgaagagttgatctgtccaatctgtagtggagttttagagga
acctctacaggctccgcagtgtgagcacgctttctgcagtgactgtatacaggaatggctgacccgacaaccaacgtgcc
ctgttgacaggtccacgatcactcccaatcagctcaaacctgtaccaaggatattaagaaacttgctctcaaggctacag
atagcatgtgagaatgctgcaaacggttgtacagcagtggatcataattgtgctcgtgaacttaggaacttggttcagca
gcaggctcacaagatcgcagaaatgcaaacggaattaacggagcacaaactacaaataaatgaacaaaagagagaactcc
aacttctcaaggagtacatgaggtccatgcgtgtgtcaaatccaagaatgagagagatacaatctgagatggagaatgca
gatgtaataaggtgggtgggaagtttaaccgctgccagagtgacgagatggggaggaatgatctctacacctgatgccgt
tctacaagccgtcatcaaaagggcgcttatagacagcgggtgcccctcacatatcgttaacgagctcatggaaaatgccc
acgaacggagatggcccagcgggcttagcacactagagaccagacaactcaacaggcggcaatatgaaaattatgttaca
aaaagaatcccaggaaaacaagcagtggttgtgatggcatgtgagaacgagcatatgcctgaagacctgatcatcgaacc
aggactggttatgatatttgcacatggtgtagaatag

Protein
Protein IDpfu_aug2.0_2020.1_01952.t1
Definition-
>pfu_aug2.0_2020.1_01952.t1
MGYETNRFQGDVDEELICPICSGVLEEPLQAPQCEHAFCSDCIQEWLTRQPTCPVDRSTITPNQLKPVPRILRNLLSRLQ
IACENAANGCTAVDHNCARELRNLVQQQAHKIAEMQTELTEHKLQINEQKRELQLLKEYMRSMRVSNPRMREIQSEMENA
DVIRWVGSLTAARVTRWGGMISTPDAVLQAVIKRALIDSGCPSHIVNELMENAHERRWPSGLSTLETRQLNRRQYENYVT
KRIPGKQAVVVMACENEHMPEDLIIEPGLVMIFAHGVE

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