Gene
| Gene Model ID | pfu_aug2.0_2022.1_08702 |
|---|---|
| Locus | scaffold2022.1 : 46816 ... 48255 : + |
| To GenomeBrowser | scaffold2022.1:46816..48255 |
| Genes list of scaffold | scaffold2022.1 |
| Synonym | pfu_aug1.0_466.1_65472 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2022.1_08702.t1 | 2 | 1 | zf-CCHC | 191 | 207 | 1.5e-09 | 37.3 | 2.9e-07 | 0.0011 | 18.7 |
| pfu_aug2.0_2022.1_08702.t1 | 2 | 2 | zf-CCHC | 210 | 226 | 1.5e-09 | 37.3 | 2.3e-08 | 8.7e-05 | 22.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2022.1_08702.t1 | gi|260816231|ref|XP_002602875.1| | hypothetical protein BRAFLDRAFT_103258 [Branchiostoma floridae] | 5.0e-13 |
| pfu_aug2.0_2022.1_08702.t1 | gi|564240508|ref|XP_006277087.1| | PREDICTED: cellular nucleic acid-binding protein-like [Alligator mississippiensis] | 4.0e-07 |
Transcript
| Transcript ID | pfu_aug2.0_2022.1_08702.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2022.1_08702.t1 atgcgatcatacgcggatgcgttggcgccagaagttcgggacactgcaaagcccatatttataaaagagtttgacctttt cggcactcataagcctgcacaaagcgaatggctgaatcatattgaactatataaagcttttgcagatgttcttccacccg agaacattgcaggactccaaagagtacatgggctctggagaatttacatgtttgatgagcattcacgatcgacccttcta acatcgtctttctctcttcgaggaaaacacatgaccatttatgatgtaaacccaggtaccccatatggtggagatactat gcgaatccgagtaaaaaacattcccttgtcggcagacgatggacaaataaagcgaacccttctcattcacaaatgtgttg tcaaaagcttatttcgtgaaaagcttagagttgatggccgacttacaaactgcaaaactggcgatcgaatagcaatagtg gaaaaactgcaatctcatccgccaaaatctgttgaaattagtcggtataaagcaataattagctacctaggtcaaccaaa tgagagaaaacagtgcaacaactgtcttcgattgggtcattctgccagggaatgcaccaatgatatggtctgctttgaat gtcatgagactgggcataagatgtcagactgccctgaaaaacttggacaagatgataacacgtgcttttcacaatctgat tctgaagctgaaagcacatgcactggcgaggagtgtgaaagtgactctcaatcacaacagcaagctggtgatacttcctt gtcaaatcaggctgcacatgctactcctgagacacctagagcagtatctagtgaatccgccaatatcatttcaaatgtct caaaagaaaaaaaatcaagatga |
|
Protein
| Protein ID | pfu_aug2.0_2022.1_08702.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2022.1_08702.t1 MRSYADALAPEVRDTAKPIFIKEFDLFGTHKPAQSEWLNHIELYKAFADVLPPENIAGLQRVHGLWRIYMFDEHSRSTLL TSSFSLRGKHMTIYDVNPGTPYGGDTMRIRVKNIPLSADDGQIKRTLLIHKCVVKSLFREKLRVDGRLTNCKTGDRIAIV EKLQSHPPKSVEISRYKAIISYLGQPNERKQCNNCLRLGHSARECTNDMVCFECHETGHKMSDCPEKLGQDDNTCFSQSD SEAESTCTGEECESDSQSQQQAGDTSLSNQAAHATPETPRAVSSESANIISNVSKEKKSR |
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