Gene
Gene Model ID | pfu_aug2.0_2023.1_11985 |
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Locus | scaffold2023.1 : 77487 ... 116125 : - |
To GenomeBrowser | scaffold2023.1:77487..116125 |
Genes list of scaffold | scaffold2023.1 |
Synonym | pfu_aug1.0_17756.1_32848 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_2023.1_11985.t1 | 1 | 1 | SRP40_C | 685 | 757 | 2.0e-28 | 98.7 | 6.5e-32 | 9.6e-28 | 96.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_2023.1_11985.t1 | gi|571554217|ref|XP_006566059.1| | PREDICTED: nucleolar and coiled-body phosphoprotein 1-like isoform X3 [Apis mellifera] | 3.0e-35 |
pfu_aug2.0_2023.1_11985.t1 | gi|572309865|ref|XP_006620710.1| | PREDICTED: nucleolar and coiled-body phosphoprotein 1-like isoform X3 [Apis dorsata] | 4.0e-35 |
pfu_aug2.0_2023.1_11985.t1 | gi|524882824|ref|XP_005098048.1| | PREDICTED: nucleolar and coiled-body phosphoprotein 1-like isoform X1 [Aplysia californica] | 4.0e-34 |
pfu_aug2.0_2023.1_11985.t1 | gi|524882826|ref|XP_005098049.1| | PREDICTED: nucleolar and coiled-body phosphoprotein 1-like isoform X2 [Aplysia californica] | 6.0e-34 |
pfu_aug2.0_2023.1_11985.t1 | gi|524882828|ref|XP_005098050.1| | PREDICTED: nucleolar and coiled-body phosphoprotein 1-like isoform X3 [Aplysia californica] | 9.0e-34 |
Transcript
Transcript ID | pfu_aug2.0_2023.1_11985.t1 |
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Definition | - |
>pfu_aug2.0_2023.1_11985.t1 atggcagctgttggaggaaagggatcgtcagtacttttatccttggtttatgactttttaaccgaaaaatgcaccgaagc ggcagacagactgaagaaaaagctaaaagtgattgtgccaccatcaggatctcctaaacttgaacaagtcttcagtgcat ggaatgagaacaaacgaaaacatccggacgatcagactactcctgttgcaaagaagcctaaaccaggggaatctgacagc tcctcatcaagtgattcaaatgatgatgaagatagcaagtcaccaacatcaaagaagtcaagtgtcactaagccattaca tttctctggcaacaagcgacaacatgagtctagtacatctgattcagattctgactctgaaagttcagactccgaagatg acaaaaagaagccagccaaaaaattgatgaaaaaatcaccaatgaaaaatgaggaaaagaaatcagcatcttataatgct gtaccacctcctggatcctcccctaaagggaagacagaggcagacacttcttcagattctagctctgatgaagatgtcaa gactccttcaaaatctgcagctaaagtgacaccaaaaactaaagcaagtaaagaagaaagcagtgattcttcaagctctg attctagcgatgatgaagatgacatatcaaataaaaaatcagcagttaaaaaatcgccaattacccctcctgcntcccta attacctctcctgctaaagcaactccaaaaactaacacaagaaaagaagaaagcagtgattcgtcgagctctgattccag tgatgatgaggatgacaaatcagctaatatagcagctaaagaaaagcctgcgcttgaagcaaaagttatacaaaaagcta acagcagaaaggaagaaagcagtgattcttctagctctgattcaagtgatgatgaagacgtccagccagtcaatagatca gctacagaaaaatctgtggctaagtctactcttatgagtaaaggaacagataaaactagaacaaaagaaagcagtgattc ttctagctctgactccagtgatgatgatgaaaaatctgctaaaaaatcggctgtgtctgctgctgcattgaaagtgacac caaaacttggtcagaagacggaaagcagcgattcttcgagttctgaatctgaggaagaaacatctaataaatcagcagca aaatcgaattcaatcgtcaaaacccctcatcaacgtcagaaaaaggaggaaagcagtgaatcatcaagtgatgattcaag tgaagaagatgacaagcctgctaaaaagtctgttgtaaacaaatctccaacaaaacctcatacaccgacaaataaggtaa tccaagtatccaaaaaacaagaaagttcctccagcacagagtcaagtgaggaggaggagacaaatcattcacagaaatca ctgacttctaatacaaataataaaaaagtagtgaaatctatggaaggaagtagcagtgaatctagttctgattcaagcag tgatgatgaaaaaaccaacaaatctgcctcaaatgcatctgttaatgttcctcaaagcaaagtgactcagaaaactcaga aagaagatagttcagaatcaagttcagactctagtgactcagacgaagatgtgaaaaagaaaaagaacaaaacaaatgta aaaagtaaagcattttcaaaaaagacggaagattccagtagttctgagtcaagttctgaatcagaagatgaacctagtaa gaaagttggtaccccaaaaatgacacctataacgaaaaagaaggacaactcctcatcctcatcctcatcctcatcagact ctgaggaggagtcatcagaaacaaagcagaggaaggtaacatctacgcctgtgttaaatggcatggtgaatggtatgact aatggaatagattcagacctatcaagtacttgtgagaatgaaaaaaagaatcagggaaagagaaatcagatgtccaatca aagtagaagtaacaccaacactcctggtagtggcaagaaaacaccctgcagccctttcagaagggtcaaagcagaagagg tgactcttgatccaaggctagcagataattcttttgaggccaaggctggtgccaggggctcatggggagagaaggctaat aaggacctcaaattcaccaagggcaagtcatttaggcacgaaaaaacaaagaaaaagcggggcagttataaaggaggaca aatagatgtcagcactcactcaatcaagtttgatgatagtgattaa |
Protein
Protein ID | pfu_aug2.0_2023.1_11985.t1 |
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Definition | - |
>pfu_aug2.0_2023.1_11985.t1 MAAVGGKGSSVLLSLVYDFLTEKCTEAADRLKKKLKVIVPPSGSPKLEQVFSAWNENKRKHPDDQTTPVAKKPKPGESDS SSSSDSNDDEDSKSPTSKKSSVTKPLHFSGNKRQHESSTSDSDSDSESSDSEDDKKKPAKKLMKKSPMKNEEKKSASYNA VPPPGSSPKGKTEADTSSDSSSDEDVKTPSKSAAKVTPKTKASKEESSDSSSSDSSDDEDDISNKKSAVKKSPITPPXSL ITSPAKATPKTNTRKEESSDSSSSDSSDDEDDKSANIAAKEKPALEAKVIQKANSRKEESSDSSSSDSSDDEDVQPVNRS ATEKSVAKSTLMSKGTDKTRTKESSDSSSSDSSDDDEKSAKKSAVSAAALKVTPKLGQKTESSDSSSSESEEETSNKSAA KSNSIVKTPHQRQKKEESSESSSDDSSEEDDKPAKKSVVNKSPTKPHTPTNKVIQVSKKQESSSSTESSEEEETNHSQKS LTSNTNNKKVVKSMEGSSSESSSDSSSDDEKTNKSASNASVNVPQSKVTQKTQKEDSSESSSDSSDSDEDVKKKKNKTNV KSKAFSKKTEDSSSSESSSESEDEPSKKVGTPKMTPITKKKDNSSSSSSSSSDSEEESSETKQRKVTSTPVLNGMVNGMT NGIDSDLSSTCENEKKNQGKRNQMSNQSRSNTNTPGSGKKTPCSPFRRVKAEEVTLDPRLADNSFEAKAGARGSWGEKAN KDLKFTKGKSFRHEKTKKKRGSYKGGQIDVSTHSIKFDDSD |