Gene
| Gene Model ID | pfu_aug2.0_2027.1_25256 |
|---|---|
| Locus | scaffold2027.1 : 11114 ... 13635 : - |
| To GenomeBrowser | scaffold2027.1:11114..13635 |
| Genes list of scaffold | scaffold2027.1 |
| Synonym | pfu_aug1.0_2899.1_66495 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2027.1_25256.t1 | 2 | 1 | C1q | 21 | 55 | 3.4e-10 | 39.9 | 0.054 | 800.0 | 0.0 |
| pfu_aug2.0_2027.1_25256.t1 | 2 | 2 | C1q | 51 | 108 | 3.4e-10 | 39.9 | 4.9e-14 | 7.3e-10 | 38.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2027.1_25256.t1 | gi|348545464|ref|XP_003460200.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 3-like [Oreochromis niloticus] | 1.0e-06 |
| pfu_aug2.0_2027.1_25256.t1 | gi|617485598|ref|XP_007577158.1| | PREDICTED: collagen alpha-1(VIII) chain-like, partial [Poecilia formosa] | 1.0e-05 |
Transcript
| Transcript ID | pfu_aug2.0_2027.1_25256.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2027.1_25256.t1 atgtttgtttctggcaaccgttgccatagaaacgtagatgcttttgtgagaaggatatttaaaggagtaaaactttcaat ggaccaagatgatattgttgcgcttacagatatgaaagctggttcttgtgtattggcaaagaggatttatttctctgcgt acctcacgagccacacaaaatcctcaagtctcaagagaaaccaaccaataatatacactgacgtcgtaaccaatgagggc ggagcatacagttccagcacgggcgaattcacggcaccaagatccggaggatatacatttttctgggagtttttggtata tccaaacggaaatatantttctagtttttattcaacaacgaagtatgatgatatttag |
|
Protein
| Protein ID | pfu_aug2.0_2027.1_25256.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2027.1_25256.t1 MFVSGNRCHRNVDAFVRRIFKGVKLSMDQDDIVALTDMKAGSCVLAKRIYFSAYLTSHTKSSSLKRNQPIIYTDVVTNEG GAYSSSTGEFTAPRSGGYTFFWEFLVYPNGNIXSSFYSTTKYDDI |
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