Gene
| Gene Model ID | pfu_aug2.0_2030.1_01959 |
|---|---|
| Locus | scaffold2030.1 : 52736 ... 79845 : + |
| To GenomeBrowser | scaffold2030.1:52736..79845 |
| Genes list of scaffold | scaffold2030.1 |
| Synonym | pfu_aug1.0_46513.1_48625 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna repair and recombination protein partial | GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2030.1_01959.t1 | 1 | 1 | SNF2_N | 141 | 298 | 6.6e-23 | 80.9 | 1.7e-26 | 1.2e-22 | 80.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2030.1_01959.t1 | gi|586543500|ref|XP_006906880.1| | PREDICTED: DNA repair and recombination protein RAD54B isoform X3 [Pteropus alecto] | 0.0 |
| pfu_aug2.0_2030.1_01959.t1 | gi|759190575|ref|XP_011382675.1| | PREDICTED: DNA repair and recombination protein RAD54B isoform X3 [Pteropus vampyrus] | 0.0 |
| pfu_aug2.0_2030.1_01959.t1 | gi|676428314|ref|XP_009045234.1| | hypothetical protein LOTGIDRAFT_110407, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2030.1_01959.t1 | gi|524906303|ref|XP_005108474.1| | PREDICTED: LOW QUALITY PROTEIN: DNA repair and recombination protein RAD54B-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2030.1_01959.t1 | gi|700326540|ref|XP_009910177.1| | PREDICTED: DNA repair and recombination protein RAD54B, partial [Haliaeetus albicilla] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2030.1_01959.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2030.1_01959.t1 atgagaaggtctgcagctcccagtcagttcaattcagcaaaaagagccagatttagtgtaccatttaaggattcatactc accaaaatttgatgagaaaacaaaggatttaccgatacagagtagtcacccagttcagaaggactttgagaacacaaaaa atgggaaggtgatggttatgggtttgttaacagaagaacaatttaagagtggaaagtgtttccagtctgtttcctcagac gtaacacctggcagaattaacgttcccatcagagagaataatgcaagtaagaagtacgtaaatccattaatgactggacc aaattcagaaaataaggaattgttacagattcagacacaggcggtatgtaagccacgccatgatcctaatgctcctgggg cattggttttaccaagacctagtgcaaatcatcagcttataatgagcttgccgacaagacggagaattgtgttaacaggg acacctatacagaatgatctacaggagttcttttccattgttgaattctgcaatcctggtatattaggaacaagtgctgc cttcaaaagagtgtatgaaaccccaattgttgcctctcgccagcctggggccaaagcaaaggaaatagagctcggagagg aaagaggggctgaattagccaggctaaccaaactttttatactacgtaggactcaagaggtcaacaacaaatatctacct cctaaatgtgacattgttgtgttctgtaaacccagtgagctacagttaaggttataccaaaccctgttaggaggacgtat cttccgctcttgtctagccggcaggttggacggatcaccacaccttatttgtataggagctctgaagcagctgtgtaatc atccgagtctgatctacgacaagactatagctactgaccaatgtccagaagaatttgaagagggttcggtgtacagtggt ctttgcccccagttcccttctgattttacagctgacaattgtgatgttgaacattctggcaagcttgttgtattggcctc attactgaataacattcgtgaaagcggcaaaagagagaaattagtactggtctctaatcatacaaaggcaatggccagag tttggagggacgggcagaaaaagaaagtgtatatatacagacttctcactacaggctccatagaggaaaagatatatcag cgacagatcagcaagcagggtcttagtggagctgtgatggattccaaggaaaaatgtgatgtacaattctcaaaggagga tctcaaggatttgttctctttgaatgagagaacagaatgtgatacccatgagctcctacactgttcatgtacgtgtaacg gaacggacaacgacagaggggaggtggatctgaatataagggcatgtcagctgggctctgtaccagccatgaagaaatct aagaatctaggaatggatgaactgatggactggaaacatttacgtagagagaacataacccaacagtctgagtggtatct taacaatgcagtggataatattaccttcagcttttcacatgaaagtaatatgacatcttga |
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Protein
| Protein ID | pfu_aug2.0_2030.1_01959.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2030.1_01959.t1 MRRSAAPSQFNSAKRARFSVPFKDSYSPKFDEKTKDLPIQSSHPVQKDFENTKNGKVMVMGLLTEEQFKSGKCFQSVSSD VTPGRINVPIRENNASKKYVNPLMTGPNSENKELLQIQTQAVCKPRHDPNAPGALVLPRPSANHQLIMSLPTRRRIVLTG TPIQNDLQEFFSIVEFCNPGILGTSAAFKRVYETPIVASRQPGAKAKEIELGEERGAELARLTKLFILRRTQEVNNKYLP PKCDIVVFCKPSELQLRLYQTLLGGRIFRSCLAGRLDGSPHLICIGALKQLCNHPSLIYDKTIATDQCPEEFEEGSVYSG LCPQFPSDFTADNCDVEHSGKLVVLASLLNNIRESGKREKLVLVSNHTKAMARVWRDGQKKKVYIYRLLTTGSIEEKIYQ RQISKQGLSGAVMDSKEKCDVQFSKEDLKDLFSLNERTECDTHELLHCSCTCNGTDNDRGEVDLNIRACQLGSVPAMKKS KNLGMDELMDWKHLRRENITQQSEWYLNNAVDNITFSFSHESNMTS |
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