Gene
| Gene Model ID | pfu_aug2.0_2031.1_05380 |
|---|---|
| Locus | scaffold2031.1 : 112456 ... 115026 : + |
| To GenomeBrowser | scaffold2031.1:112456..115026 |
| Genes list of scaffold | scaffold2031.1 |
| Synonym | pfu_aug1.0_11033.1_03013 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-dependent rna helicase ddx55 | GO:0004386 GO:0005524 GO:0008152 GO:0016020 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2031.1_05380.t1 | 1 | 1 | Helicase_C | 2 | 61 | 1.7e-20 | 72.6 | 4.5e-24 | 3.3e-20 | 71.7 |
| pfu_aug2.0_2031.1_05380.t1 | 2 | 1 | DUF4217 | 3 | 18 | 2.7e-21 | 74.8 | 0.3 | 2200.0 | -1.8 |
| pfu_aug2.0_2031.1_05380.t1 | 2 | 2 | DUF4217 | 102 | 163 | 2.7e-21 | 74.8 | 9.8e-25 | 7.3e-21 | 73.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2031.1_05380.t1 | gi|147899081|ref|NP_001086608.1| | ATP-dependent RNA helicase DDX55 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_2031.1_05380.t1 | gi|674061568|ref|XP_008837510.1| | PREDICTED: ATP-dependent RNA helicase DDX55 isoform X3 [Nannospalax galili] | 0.0 |
| pfu_aug2.0_2031.1_05380.t1 | gi|584020149|ref|XP_006804764.1| | PREDICTED: ATP-dependent RNA helicase DDX55-like [Neolamprologus brichardi] | 0.0 |
| pfu_aug2.0_2031.1_05380.t1 | gi|149063250|gb|EDM13573.1| | rCG21751, isoform CRA_a [Rattus norvegicus] | 0.0 |
| pfu_aug2.0_2031.1_05380.t1 | gi|410903956|ref|XP_003965459.1| | PREDICTED: ATP-dependent RNA helicase DDX55 [Takifugu rubripes] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2031.1_05380.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2031.1_05380.t1 atgaaacagaagaggaataagatattttcacagttccgaaagcttgattatggtgtattaatctgcacagacgttatggc tcgaggaattgatattccagaagtcaactgggtcattcagtatgaccctccaagtactgccacgtccttcgtgcatagat gtggtcgtactgcaagaattggtcaccatggaaacgctttagttttcttacttccctcagaggatagttacgtcaatttc ttaagcataaatcaaaaagtgccacttaaacagctcagtgaagtatctgatgtgcataattacattccaaaaataaggaa agtgtcaagcaaagatagggctatatttgaaaaagggacaaaagcttatgtatcctttgtgcagttttatgctaaacatg agtgcagcttaatatttcaattaaaagaattagatttaggaaagcttgccatgggatatggactattgaaaatacccaaa atgccagaaacaaaaggaaaggatttcccaagttttcaacctgtagatattgacctatcttccattgcatttaaagacaa ggcaagggagaagcaaagacaacaaaaactgagtgaggtggaagttaagtcgaaaacaaaattcaaacaccctccaaggt ctgaagcatggtccaagaagagaaaacagaaggaaagaagaaagaaaagaaaagagaaaaaagaattggtgaaaaaaagg aaagctgatgagatgacagaagacgacataaaggatttagatgatgatgttagggtgttaaaaaaattaaagagaggaaa aataacacaggctgagtttgataaggagtttgcagaagacttggactctgattga |
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Protein
| Protein ID | pfu_aug2.0_2031.1_05380.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2031.1_05380.t1 MKQKRNKIFSQFRKLDYGVLICTDVMARGIDIPEVNWVIQYDPPSTATSFVHRCGRTARIGHHGNALVFLLPSEDSYVNF LSINQKVPLKQLSEVSDVHNYIPKIRKVSSKDRAIFEKGTKAYVSFVQFYAKHECSLIFQLKELDLGKLAMGYGLLKIPK MPETKGKDFPSFQPVDIDLSSIAFKDKAREKQRQQKLSEVEVKSKTKFKHPPRSEAWSKKRKQKERRKKRKEKKELVKKR KADEMTEDDIKDLDDDVRVLKKLKRGKITQAEFDKEFAEDLDSD |
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