Gene
| Gene Model ID | pfu_aug2.0_204.1_13787 |
|---|---|
| Locus | scaffold204.1 : 121887 ... 127335 : - |
| To GenomeBrowser | scaffold204.1:121887..127335 |
| Genes list of scaffold | scaffold204.1 |
| Synonym | pfu_aug1.0_7197.1_45604 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| meiotic recombination protein spo11 isoform x1 | GO:0000781 GO:0001541 GO:0007129 GO:0007131 GO:0007141 GO:0007286 GO:0034502 GO:0048477 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_204.1_13787.t1 | 2 | 1 | TP6A_N | 3 | 18 | 3.4e-14 | 52.2 | 0.31 | 2300.0 | -1.7 |
| pfu_aug2.0_204.1_13787.t1 | 2 | 2 | TP6A_N | 70 | 135 | 3.4e-14 | 52.2 | 1.5e-17 | 1.1e-13 | 50.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_204.1_13787.t1 | gi|568917233|ref|XP_006499680.1| | PREDICTED: meiotic recombination protein SPO11 isoform X1 [Mus musculus] | 0.0 |
| pfu_aug2.0_204.1_13787.t1 | gi|568917235|ref|XP_006499681.1| | PREDICTED: meiotic recombination protein SPO11 isoform X2 [Mus musculus] | 0.0 |
| pfu_aug2.0_204.1_13787.t1 | gi|524949007|ref|XP_005074524.1| | PREDICTED: meiotic recombination protein SPO11 isoform X1 [Mesocricetus auratus] | 0.0 |
| pfu_aug2.0_204.1_13787.t1 | gi|148674664|gb|EDL06611.1| | sporulation protein, meiosis-specific, SPO11 homolog (S. cerevisiae), isoform CRA_a, partial [Mus musculus] | 0.0 |
| pfu_aug2.0_204.1_13787.t1 | gi|6755624|ref|NP_036176.1| | meiotic recombination protein SPO11 isoform a [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_204.1_13787.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_204.1_13787.t1 atgaatgaacaacgatacgaggagcagataataaaaaagctagaggatttgatattggagtttgtcagacaggttagcgt gtctacaccccctgtactcactcatatcaatagaactacgtgggaaaatgtcgactttaattcccaagtcggtctgtgca tgaaggatgagaatgtaaaattaacaagtgtcaggttcgactcgtggaaaagtgtgaataaattgagaatgctgatcaag gtcatctctatgatacaccaactgatgacctctggtcgctatgcaacaaagagagacctgtattaccaagacgccgaggg gatagggtctcagccgacactagatgacgctttggacaacgtctcctgtatgttacagatacctagatggcacctgcata tcctagctacatctaaaggatgcgtggcgggaaatctatccttcctagacgcggacggaagttacgtagattgcagcaag accaaaaacggaatactggtaccatctcacatcgaggctttgcatcaggttcatacaacggcaagattcttgctcatagt ggaaaaagacgctgtgttccaaaaactgcttgatgacaatttttgtgagcacatgaagccgtgtattttggtgacaggta aggggttcccagacataaatacaagaatgctgctgaatcgtatctggagagagaatcagttaccaatggcaatattggtt gacgcagattcatacggaatagaaataatgtgtgtctacaaattcggctctagatcctttcatttgaagccaagttcctc acaagagatgcctgacctacagagagaacttcaagtcctcctagcgatggacaagaaggctgagatagagtgtctggatg cagtcagtcctacttttctgtcacgtacttatttgccagccaaactcgagtccatccttaccaagttcctcacagttcca accataaactggctggggattttgcctagcgatattgaccgtctggcagtaccaaaggaaacgctgatcactatgtcaca gacagacaaagataaaatctcagacctaatgtccagaccatacttcagagagatgcctgacctacagagagaacttcaag tcctcctaacgatggacaagaaggctgagatagagtgtctggatgcagtcagtcctacttttctgtcacgtacttatttg ccagccaaactcgagtccatccttagtaagcagatgtaa |
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Protein
| Protein ID | pfu_aug2.0_204.1_13787.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_204.1_13787.t1 MNEQRYEEQIIKKLEDLILEFVRQVSVSTPPVLTHINRTTWENVDFNSQVGLCMKDENVKLTSVRFDSWKSVNKLRMLIK VISMIHQLMTSGRYATKRDLYYQDAEGIGSQPTLDDALDNVSCMLQIPRWHLHILATSKGCVAGNLSFLDADGSYVDCSK TKNGILVPSHIEALHQVHTTARFLLIVEKDAVFQKLLDDNFCEHMKPCILVTGKGFPDINTRMLLNRIWRENQLPMAILV DADSYGIEIMCVYKFGSRSFHLKPSSSQEMPDLQRELQVLLAMDKKAEIECLDAVSPTFLSRTYLPAKLESILTKFLTVP TINWLGILPSDIDRLAVPKETLITMSQTDKDKISDLMSRPYFREMPDLQRELQVLLTMDKKAEIECLDAVSPTFLSRTYL PAKLESILSKQM |
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