Gene
| Gene Model ID | pfu_aug2.0_204.1_13789 |
|---|---|
| Locus | scaffold204.1 : 153327 ... 159621 : + |
| To GenomeBrowser | scaffold204.1:153327..159621 |
| Genes list of scaffold | scaffold204.1 |
| Synonym | pfu_aug1.0_12166.1_61007 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 60s acidic ribosomal protein p2 | GO:0003735 GO:0005840 GO:0006414 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_204.1_13789.t1 | 1 | 1 | Ribosomal_60s | 23 | 114 | 1.8e-24 | 85.9 | 1.4e-28 | 2.1e-24 | 85.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_204.1_13789.t1 | gi|676466860|ref|XP_009057703.1| | hypothetical protein LOTGIDRAFT_121932 [Lottia gigantea] | 2.0e-28 |
| pfu_aug2.0_204.1_13789.t1 | gi|524892640|ref|XP_005102846.1| | PREDICTED: 60S acidic ribosomal protein P2-like isoform X2 [Aplysia californica] | 5.0e-28 |
| pfu_aug2.0_204.1_13789.t1 | gi|637246864|ref|XP_008106552.1| | PREDICTED: 60S acidic ribosomal protein P2 isoform X2 [Anolis carolinensis] | 5.0e-27 |
| pfu_aug2.0_204.1_13789.t1 | gi|57526755|ref|NP_997908.1| | 60S acidic ribosomal protein P2 [Danio rerio] | 6.0e-27 |
| pfu_aug2.0_204.1_13789.t1 | gi|336273920|ref|XP_003351714.1| | 60S acidic ribosomal protein P2 [Sordaria macrospora k-hell] | 4.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_204.1_13789.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_204.1_13789.t1 atggcaactcatataatgcgttacgtagcagcctacttgctcgccagcttgggaggtaatactgccccctcagcagcaga tctggagaagatcatagggtctgtaggcattgaagcagaggctgataaagtcaagaaaataatcggagaactcaagggaa aagatctagaagaactcatcactgaaggtcagtccaagttggcgtcagtaccatcaggtggcgctgtggctgccggaggt ggtggtgccgcaccggctgctgaagcaaaggaagagaagaaagaagagaagaaaccagagccagaatctgagagtgacga cgatatgggattcggactctttgattaa |
|
Protein
| Protein ID | pfu_aug2.0_204.1_13789.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_204.1_13789.t1 MATHIMRYVAAYLLASLGGNTAPSAADLEKIIGSVGIEAEADKVKKIIGELKGKDLEELITEGQSKLASVPSGGAVAAGG GGAAPAAEAKEEKKEEKKPEPESESDDDMGFGLFD |
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