Gene
| Gene Model ID | pfu_aug2.0_204.1_13793 |
|---|---|
| Locus | scaffold204.1 : 272556 ... 297926 : - |
| To GenomeBrowser | scaffold204.1:272556..297926 |
| Genes list of scaffold | scaffold204.1 |
| Synonym | pfu_aug1.0_1105.1_58365 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| clathrin heavy chain 1-like isoform x1 | GO:0005198 GO:0006886 GO:0016192 GO:0030130 GO:0030132 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_204.1_13793.t1 | 8 | 1 | Clathrin_propel | 20 | 56 | 0.0 | 161.1 | 6.6e-07 | 0.00075 | 19.6 |
| pfu_aug2.0_204.1_13793.t1 | 4 | 1 | Coatomer_WDAD | 48 | 200 | 4.8e-07 | 28.9 | 0.014 | 16.0 | 4.1 |
| pfu_aug2.0_204.1_13793.t1 | 8 | 2 | Clathrin_propel | 60 | 94 | 0.0 | 161.1 | 9.9e-06 | 0.011 | 15.9 |
| pfu_aug2.0_204.1_13793.t1 | 8 | 3 | Clathrin_propel | 102 | 133 | 0.0 | 161.1 | 5.0e-06 | 0.0057 | 16.8 |
| pfu_aug2.0_204.1_13793.t1 | 8 | 4 | Clathrin_propel | 152 | 183 | 0.0 | 161.1 | 5.0e-06 | 0.0057 | 16.8 |
| pfu_aug2.0_204.1_13793.t1 | 8 | 5 | Clathrin_propel | 199 | 237 | 0.0 | 161.1 | 2.5e-09 | 2.9e-06 | 27.2 |
| pfu_aug2.0_204.1_13793.t1 | 8 | 6 | Clathrin_propel | 249 | 284 | 0.0 | 161.1 | 3.3e-06 | 0.0038 | 17.4 |
| pfu_aug2.0_204.1_13793.t1 | 8 | 7 | Clathrin_propel | 306 | 338 | 0.0 | 161.1 | 1.5e-06 | 0.0017 | 18.4 |
| pfu_aug2.0_204.1_13793.t1 | 4 | 2 | Coatomer_WDAD | 322 | 349 | 4.8e-07 | 28.9 | 1.7 | 1900.0 | -2.8 |
| pfu_aug2.0_204.1_13793.t1 | 8 | 8 | Clathrin_propel | 346 | 380 | 0.0 | 161.1 | 3.8e-08 | 4.4e-05 | 23.4 |
| pfu_aug2.0_204.1_13793.t1 | 1 | 1 | Clathrin-link | 381 | 404 | 2.3e-11 | 42.4 | 6.2e-14 | 7.1e-11 | 40.9 |
| pfu_aug2.0_204.1_13793.t1 | 1 | 1 | Clathrin_H_link | 406 | 471 | 4.2e-33 | 113.0 | 1.4e-35 | 1.6e-32 | 111.1 |
| pfu_aug2.0_204.1_13793.t1 | 10 | 1 | Clathrin | 548 | 583 | 0.0 | 755.9 | 0.32 | 360.0 | 0.6 |
| pfu_aug2.0_204.1_13793.t1 | 10 | 2 | Clathrin | 593 | 702 | 0.0 | 755.9 | 1.1e-23 | 1.3e-20 | 73.4 |
| pfu_aug2.0_204.1_13793.t1 | 10 | 3 | Clathrin | 710 | 745 | 0.0 | 755.9 | 0.29 | 330.0 | 0.8 |
| pfu_aug2.0_204.1_13793.t1 | 10 | 4 | Clathrin | 755 | 890 | 0.0 | 755.9 | 1.2e-24 | 1.4e-21 | 76.5 |
| pfu_aug2.0_204.1_13793.t1 | 10 | 5 | Clathrin | 901 | 1038 | 0.0 | 755.9 | 4.5e-26 | 5.2e-23 | 81.2 |
| pfu_aug2.0_204.1_13793.t1 | 10 | 6 | Clathrin | 1050 | 1182 | 0.0 | 755.9 | 4.8e-35 | 5.5e-32 | 110.3 |
| pfu_aug2.0_204.1_13793.t1 | 10 | 7 | Clathrin | 1191 | 1331 | 0.0 | 755.9 | 5.9e-37 | 6.7e-34 | 116.5 |
| pfu_aug2.0_204.1_13793.t1 | 4 | 3 | Coatomer_WDAD | 1301 | 1380 | 4.8e-07 | 28.9 | 3.5e-08 | 4.0e-05 | 22.5 |
| pfu_aug2.0_204.1_13793.t1 | 10 | 8 | Clathrin | 1341 | 1479 | 0.0 | 755.9 | 3.0e-33 | 3.5e-30 | 104.4 |
| pfu_aug2.0_204.1_13793.t1 | 4 | 4 | Coatomer_WDAD | 1445 | 1484 | 4.8e-07 | 28.9 | 0.0079 | 9.0 | 4.9 |
| pfu_aug2.0_204.1_13793.t1 | 10 | 9 | Clathrin | 1487 | 1629 | 0.0 | 755.9 | 3.8e-34 | 4.4e-31 | 107.4 |
| pfu_aug2.0_204.1_13793.t1 | 10 | 10 | Clathrin | 1635 | 1776 | 0.0 | 755.9 | 1.9e-35 | 2.1e-32 | 111.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_204.1_13793.t1 | gi|524869547|ref|XP_005091566.1| | PREDICTED: clathrin heavy chain 1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_204.1_13793.t1 | gi|524869549|ref|XP_005091567.1| | PREDICTED: clathrin heavy chain 1-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_204.1_13793.t1 | gi|676466854|ref|XP_009057701.1| | hypothetical protein LOTGIDRAFT_233411 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_204.1_13793.t1 | gi|499021877|ref|XP_004561711.1| | PREDICTED: clathrin heavy chain 1 isoform X2 [Maylandia zebra] | 0.0 |
| pfu_aug2.0_204.1_13793.t1 | gi|499021875|ref|XP_004561710.1| | PREDICTED: clathrin heavy chain 1 isoform X1 [Maylandia zebra] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_204.1_13793.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_204.1_13793.t1 atgtcacagttgctccctattcggttccaggagcacttgcagcttcagaatgtgggtatcagtgcggctaacatcgggtt tagtaccctcacaatggagtctgacaaatacatctgtatacgggaaactgtcggagacacggctcaagttgtcatcatcg accttaacgacagctctaacccaatcaggaggcctatttctgcagactctgccatcatgaaccctaccagcaaagtcatt gcactcaaagcgggtaaaactctgcagatatttaatattgagatgaagagcaagatgaagtcccacacaatgacagagga ggttacattctggaggtggatttctgttaacaccatcgccatagtaacagatgcttatgtttaccattggagtatggaag cgggtaaaactctgcagatatttaatattgagatgaagagcaagatgaagtcccacacaatgacagaggaggttacattc tggaggtggatttctgttaacaccatcgccatagtaacagatgcttatgtttaccattggagtatggaaggtgactctca gccacagaagatgtttgatcgccattctaacttggccggttgtcagattatcaactatagaacagatgctaaacaacagt ggcttctactcatcggaatttcagctcagcaaaatcgtgtggtaggtgccatgcagctttactctgtggagcgtaaggtc agtcagccaatagaaggtcacgctgcagcattcgccacgatgaaactagatggaaacgctaacccatcaactctcttcac ttttgctgttagaggtgctcagggaggcaaactacatgtgatagaggttggtcaagcaccacaaggaaatactccgttcg caaagaaaaacgtcgatgttttcttccctcctgaggcacagaatgacttccctgtagccatgcaggtcagtccaaaacac aatgtggtgtttatgattacaaaatacggctatctacacatgtacgacctagaaacaggcacgtgtatatacatgaacag gataagtggcgacaccatatttgtaactgcccctcatgaggctacttctggcatcatcggtgtaaatcgtaaaggacagg tattgtctgtgagtgtagaggaagacaacatagtacaatacatcaccaacaacctgcaaaatcctgacctagccctaaaa atagcctctcgtgccaacctacccggggccgaggacctctttgtcaggaaatttaacaacttgtttcagagtggaaacta cacagaggcagccaaagtagctgctagtgcacctaagggtattctgagaaccccacagaccatacagagattccaacagt taccgtcagcccagggtcagacctctccattactacagtactttggtatcctcctggacaaaggcagtctgaacaagtac gagtcgttagaactgtgtcgtcctgtgttacagtctggtaggaaacaactactggagaaatggctcaaagaagataagct ccaagccagtgaggagttaggagacctagtgaaagcagtagatccacaattagctctgtctgtataccttagagcccaag taccacagaaagtcattcagtgttttgcggagacgggacagtttgacaagatcgttctatacgccaaaaaaactggctac acgcctgattacatcttcctccttaggagccttatgagaatgaacccagaacaaggaacgtcgttcgcccagaaacttgt tcaggacgatgaaccactggcagatctcaaccagatagttgacgtatttatggagttaaacctagtacagcagtgcacat ccttcctgctagacgctctgaagaataaccgcccctcagagggtccgttacagacacgcctactcgagatgaacctcatg tcagcaccacaggtggctgacgctatccttggaaatcagatgttcacacactatgatagagcacacatcgctcagctctg tgagaaagctggactcttacaaagggcgttagaacactacacagatctgtacgacatcaagagagctgttgtacatacac acctacttaatcctgaggtcattcagtgttttgcggagactggacagtttgacaagatcgttctatatgccaagaagact ggttacacgcctgattacatcttcctcctgaggagtcttatgagaatgaacccagaacaaggaacgtcattcgcccagaa actggttcaggacgatgaaccactggcagatctcaaccagatagttgatgtatttatggagttaaacctagtacagcagt gcacatccttcctgctagacgccctgaaaaataaccgcccttcggagggtccgttacagacacgcttactagagatgaac ctcatgtcagcaccacaggtggctgacgctatccttggaaatcagatgttcacacactatgatagagcacacatcgctca gctctgtgagaaagctggactcctacaaagggcgttagaacactacacagatctgtacgacatcaagagagctgttgtac atacacacctacttaatcctgagtggttagtgacctactttggctcgctgtccgtggacgactccctggaatgtatcaag gccatgttacaggcaaacatccgtcagaatctacaagtctgtgtacaaatagcatcaaaatatcatgaacaactcggaac acaagctcttatagaaatatttgaatcattcaaaagctttgaaggacttttctacttccttggatctatcgtcaacttca gtcaggatggagacgttcacttcaagtacattcaggcggcctgcaaaactggacaaatcaaagaagtggaaagaatttgt agagaaagtaacgtgtacgatcctgaacgtgtaaagaacttcctaaaggaagccaaacttacagaccagctgccccttat tatagtgtgtgacagatttgactttgttcatgacctcgtgttatacttatacagaaataatctacagaaatacatagaaa tctacattcaaaaggtgaatccagcccgtttacctgtagttataggtggtctgttagatgtagactgtggtgaagacgta atcaaacagctgatcatggtggtcaaaggccaattctctacagatgaactagtagaagaagtagagaaaagaaacaggtt gaagctgttacttccttggttagagatgagagttcacgagggtgtacaggaaccagctacccataatgcactggccaaaa tctacatagatagtaacaataacccagagagattcctaagagagaaccagttttacgacagtcgtgtggtgggtaaatac tgcgagaagagagatccacatttagcctgtgtagcttatgaaagaggtcaatgtgacgaagaacttatacaggtttgcaa tgagaactcactgtttaagagtgaggctagatacttagtacgtaggagagaccttgacctatgggcgaaggttcttaatg aagaaaatgaatacagacgacagctgatagaccaggttgtacaaacggcattatcagagacccaggaccctgaggatatc tctgttacagtcaaagccttcatgacggctgatctacctaacgagctgatagaactactggagaagatcgtactggataa ctcagtgttcagtgagcataggaatctacagaacttgttgattctgacggctatcaaagctgaccgtacacgtgtaatgg agtatattaatcgcctggataattacgatgctccggatatagcaaacatcgctatcagtaatgaactgtttgaagaggct tttgctatcttcaagaaatttgaagtcaacacttcagctatacaggtattgattgagaatgtgaacaacttagacagagc gtacgagtttgccgagcgttgtaatgatccggccgtatggagccagttaggacgtgcacagttagatcagggaatggtta aggaggccatagattcctttataaaagctgatgatcctacacaatatatggaagttgttaatgtagctagtaataataac agctgggaagatttagtgaaattccttcaaatggcaagaaagaagacgagggaaacatttatagagacagaattagtgta tgcctatgcaaagaccaacagactggcagatttagaagaatttatatcgggtcctaaccatgctaacattacacaggtag cagacaggtgttttgatgataagatgtatgatgctgctaagctcctgtacaacaatgtatctaactacgccagactggct atcactctagtccatttaggagagtaccagggagccgtggatggtgctagaaaagctaacagcactaaaacatggaaaga ggtgtgctttgcatgtgtaaacaatgaggagttccgtttggcccagatgtgtggtttacatatagttgtacacgctgatg aattagaagatttaatcaactactaccaagataggggatacttcgaggaacttataaccttattagaggcagcattaggt ttagaaagggcccatatgggcatgttcacagaattagcaattttatactcaaaattcaagccaaacaaaatgagagaaca tttagaattgttctggtcaagagttaacattccaaaggtactacgtgccgctgagcaagcccatctatggcctgagctag ttttcctgtatgacaaatacgaggaatatgataacgccattatagctatgatgaaccatccaacagaggcctggaaggaa agtcagtttaaggacatcgtcaccaaagtggctaatatagagctgtactacaaagccattcaattctacctagacttcaa accgttacttttgaatgatttactaatggtcctaacaccgcgtctagaccatactcgagctgtgaacttctttgctaagg tcaaccagattccgctggtcaagccctacctccgtagtgtccagaaaaacaacaacaaagctattaacgaggcattgaac aacttgctgatagaggaggaggactatcagggtctacaagcctccatagacggctacgataactttgataatatcatgct ggcacagcgactcgagaaacacgagttgattgagttcaggaggatagctgcgtatctgtacaagggcaacaatcggtgga agcagtctgttgacctctgtaaaaaagataaactattcaaggatgcaatgtgttacgctggtgaatcccgtaatgttgat atagcggaggatttgatagcttggttcctggaggagaagtaccatgaatgttttgcagcgtgtctgttccaatgctatga tttactacgaccagacgtaatcctagagctagcatggagacataacattatggactttgccatgccgtatatgatacagg ttgtgagggagtacatcagcaaggttgataagttagaacaagcagagaatgtaaggagcgaagaggagcagaaagctgag gaacgacccatcgtatttgctgagccccagctgatgttgactgctggaccagccactatgatggcccctcctcaggcccc ctccccccaacctccatatggtggggcatacccaggtggaatgggaggcggggtccctccctatggatacagcatgtaa |
|
Protein
| Protein ID | pfu_aug2.0_204.1_13793.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_204.1_13793.t1 MSQLLPIRFQEHLQLQNVGISAANIGFSTLTMESDKYICIRETVGDTAQVVIIDLNDSSNPIRRPISADSAIMNPTSKVI ALKAGKTLQIFNIEMKSKMKSHTMTEEVTFWRWISVNTIAIVTDAYVYHWSMEAGKTLQIFNIEMKSKMKSHTMTEEVTF WRWISVNTIAIVTDAYVYHWSMEGDSQPQKMFDRHSNLAGCQIINYRTDAKQQWLLLIGISAQQNRVVGAMQLYSVERKV SQPIEGHAAAFATMKLDGNANPSTLFTFAVRGAQGGKLHVIEVGQAPQGNTPFAKKNVDVFFPPEAQNDFPVAMQVSPKH NVVFMITKYGYLHMYDLETGTCIYMNRISGDTIFVTAPHEATSGIIGVNRKGQVLSVSVEEDNIVQYITNNLQNPDLALK IASRANLPGAEDLFVRKFNNLFQSGNYTEAAKVAASAPKGILRTPQTIQRFQQLPSAQGQTSPLLQYFGILLDKGSLNKY ESLELCRPVLQSGRKQLLEKWLKEDKLQASEELGDLVKAVDPQLALSVYLRAQVPQKVIQCFAETGQFDKIVLYAKKTGY TPDYIFLLRSLMRMNPEQGTSFAQKLVQDDEPLADLNQIVDVFMELNLVQQCTSFLLDALKNNRPSEGPLQTRLLEMNLM SAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEVIQCFAETGQFDKIVLYAKKT GYTPDYIFLLRSLMRMNPEQGTSFAQKLVQDDEPLADLNQIVDVFMELNLVQQCTSFLLDALKNNRPSEGPLQTRLLEMN LMSAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVTYFGSLSVDDSLECIK AMLQANIRQNLQVCVQIASKYHEQLGTQALIEIFESFKSFEGLFYFLGSIVNFSQDGDVHFKYIQAACKTGQIKEVERIC RESNVYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYIQKVNPARLPVVIGGLLDVDCGEDV IKQLIMVVKGQFSTDELVEEVEKRNRLKLLLPWLEMRVHEGVQEPATHNALAKIYIDSNNNPERFLRENQFYDSRVVGKY CEKRDPHLACVAYERGQCDEELIQVCNENSLFKSEARYLVRRRDLDLWAKVLNEENEYRRQLIDQVVQTALSETQDPEDI SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEA FAIFKKFEVNTSAIQVLIENVNNLDRAYEFAERCNDPAVWSQLGRAQLDQGMVKEAIDSFIKADDPTQYMEVVNVASNNN SWEDLVKFLQMARKKTRETFIETELVYAYAKTNRLADLEEFISGPNHANITQVADRCFDDKMYDAAKLLYNNVSNYARLA ITLVHLGEYQGAVDGARKANSTKTWKEVCFACVNNEEFRLAQMCGLHIVVHADELEDLINYYQDRGYFEELITLLEAALG LERAHMGMFTELAILYSKFKPNKMREHLELFWSRVNIPKVLRAAEQAHLWPELVFLYDKYEEYDNAIIAMMNHPTEAWKE SQFKDIVTKVANIELYYKAIQFYLDFKPLLLNDLLMVLTPRLDHTRAVNFFAKVNQIPLVKPYLRSVQKNNNKAINEALN NLLIEEEDYQGLQASIDGYDNFDNIMLAQRLEKHELIEFRRIAAYLYKGNNRWKQSVDLCKKDKLFKDAMCYAGESRNVD IAEDLIAWFLEEKYHECFAACLFQCYDLLRPDVILELAWRHNIMDFAMPYMIQVVREYISKVDKLEQAENVRSEEEQKAE ERPIVFAEPQLMLTAGPATMMAPPQAPSPQPPYGGAYPGGMGGGVPPYGYSM |
|