Gene
| Gene Model ID | pfu_aug2.0_205.1_17107 |
|---|---|
| Locus | scaffold205.1 : 55306 ... 62227 : + |
| To GenomeBrowser | scaffold205.1:55306..62227 |
| Genes list of scaffold | scaffold205.1 |
| Synonym | pfu_aug1.0_27217.1_40660 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_205.1_17107.t1 | 1 | 1 | LSM14 | 2 | 71 | 3.6e-07 | 29.8 | 1.2e-10 | 9.0e-07 | 28.6 |
| pfu_aug2.0_205.1_17107.t1 | 2 | 1 | FDF | 199 | 250 | 5.2e-07 | 30.1 | 0.16 | 1200.0 | 0.0 |
| pfu_aug2.0_205.1_17107.t1 | 2 | 2 | FDF | 258 | 319 | 5.2e-07 | 30.1 | 7.0e-11 | 5.2e-07 | 30.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_205.1_17107.t1 | gi|676429774|ref|XP_009045710.1| | hypothetical protein LOTGIDRAFT_180090 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_205.1_17107.t1 | gi|705674779|ref|XP_010116422.1| | PREDICTED: enhancer of mRNA-decapping protein 3 [Chlamydotis macqueenii] | 0.0 |
| pfu_aug2.0_205.1_17107.t1 | gi|260829489|ref|XP_002609694.1| | hypothetical protein BRAFLDRAFT_61746 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_205.1_17107.t1 | gi|699640240|ref|XP_009909896.1| | PREDICTED: enhancer of mRNA-decapping protein 3 [Picoides pubescens] | 0.0 |
| pfu_aug2.0_205.1_17107.t1 | gi|675606146|ref|XP_008946899.1| | PREDICTED: enhancer of mRNA-decapping protein 3 [Merops nubicus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_205.1_17107.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_205.1_17107.t1 atgagttttgtaggaagtatcgtgtccctcgattgtggggaatctctagggacgtaccaaggacaagtcatgtgcatcaa taacagctcccaagatctcactattcataatgcatacagaaacggccttaaatgttctgttcctgaaattactatcaatg catgtgatatcaaagaactgaaaattatcaaggatccgaaagaggcagatcagattacggctaaagaggccactccctgt aaactgtccccagaaaacaatgaaaatgaagtgttctgtccttctccagtaaaagttgtggatacaccattaggtgcaag tgaaaatggagtaccaacaaaacgtaaacaatctgttggtcatgacaaatatccatgtagttatgtggacagtatgaatg gacacattaacagtaacggtatacataggagcaggagtgatcagaaatttccgtcgtccaatggggtcgcagcatgcagg agatcacctatgaatgagccaggcagattcacaccacccgctaggacgtcccacacacagacaaagatgtccccacccgg cagtggtggcatgcagaaaaacgttaaattcacacccacaaaggaaaatcagcaatctgggtttagaccaaggcgaaact ctgcctccgacatgaagagcacctgtaccagtaagaggtccacaactccaagaaagattgatttcaggaaaaggtcacag tcaagggaccaacaggatgactgttttagtgcaccaaaccattcctatcttactgattttgattttgagaaaaacttagc cttgtttgataaaaaagcagtgtttgaagaaatagaaaatgctaatcctgactgtgttaaggtagtggaggcaaagaaac cacaaaaatatagatgtgatgaaaatgtgctacaatcaggacctgttgtcttacaacagattaaagtgccaaataacgtg gaatctgtacagcagtttgttacagatgcaggtcttattgttcccaccatatcttatgagctaaggaccagacttttctc agcggcaacaaaatttggcttcagagaagatcgtcagattgagatggtgggtcgttccgtcagtgagatggtactacagc ttcttggaggctcaacaagctatgctcaattaccagcagcacttcaggaagaactgaatctgtttaaattctgtgatggg attgtaacttctagtcttcaagatttgccttctggagctgtagatataattattagtgctgttgaaagtcacgataacga taaacttaatcaacaaggatggtttgtagccgtgacagaatgggcaaatcagaacagggcccctgcattatctatggatc ctccgctgaatggatctaggatcaagtcaaagtggagtctcagcatttgccttccattaaacttgaatgttggcacttcg caaaattttctttgtgacttgggctttcccaagaaagtctttcaggaggtcgggattaagtacctatcaccgtttggtca caagttcattatcccgctacatccgaggtcctag |
|
Protein
| Protein ID | pfu_aug2.0_205.1_17107.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_205.1_17107.t1 MSFVGSIVSLDCGESLGTYQGQVMCINNSSQDLTIHNAYRNGLKCSVPEITINACDIKELKIIKDPKEADQITAKEATPC KLSPENNENEVFCPSPVKVVDTPLGASENGVPTKRKQSVGHDKYPCSYVDSMNGHINSNGIHRSRSDQKFPSSNGVAACR RSPMNEPGRFTPPARTSHTQTKMSPPGSGGMQKNVKFTPTKENQQSGFRPRRNSASDMKSTCTSKRSTTPRKIDFRKRSQ SRDQQDDCFSAPNHSYLTDFDFEKNLALFDKKAVFEEIENANPDCVKVVEAKKPQKYRCDENVLQSGPVVLQQIKVPNNV ESVQQFVTDAGLIVPTISYELRTRLFSAATKFGFREDRQIEMVGRSVSEMVLQLLGGSTSYAQLPAALQEELNLFKFCDG IVTSSLQDLPSGAVDIIISAVESHDNDKLNQQGWFVAVTEWANQNRAPALSMDPPLNGSRIKSKWSLSICLPLNLNVGTS QNFLCDLGFPKKVFQEVGIKYLSPFGHKFIIPLHPRS |
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