Gene
| Gene Model ID | pfu_aug2.0_205.1_17115 |
|---|---|
| Locus | scaffold205.1 : 193215 ... 195459 : - |
| To GenomeBrowser | scaffold205.1:193215..195459 |
| Genes list of scaffold | scaffold205.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| polyubiquitin isoform x2 | GO:0002020 GO:0002755 GO:0005654 GO:0005737 GO:0007250 GO:0010992 GO:0019985 GO:0034134 GO:0034138 GO:0034142 GO:0034146 GO:0034154 GO:0035419 GO:0035681 GO:0035682 GO:0044822 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_205.1_17115.t1 | 2 | 1 | Rad60-SLD | 1 | 71 | 6.00036e-42 | 141.1 | 2.9e-23 | 2.8e-20 | 71.7 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 1 | Telomere_Sde2 | 1 | 76 | 1.7e-10 | 40.8 | 7.3e-07 | 0.00072 | 19.2 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 1 | ubiquitin | 6 | 74 | 0.0 | 235.8 | 3.4e-38 | 3.3e-35 | 119.2 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 1 | TUG-UBL1 | 9 | 52 | 5.3e-06 | 26.2 | 0.00011 | 0.11 | 12.3 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 1 | Rad60-SLD_2 | 10 | 71 | 9.4e-08 | 31.9 | 2.4e-05 | 0.024 | 14.5 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 1 | Ubiquitin_2 | 11 | 69 | 9.1e-15 | 54.6 | 1.0e-08 | 1.0e-05 | 25.6 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 1 | DUF2407 | 13 | 59 | 1.9e-06 | 27.9 | 6.6e-05 | 0.065 | 13.4 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 2 | Rad60-SLD | 77 | 147 | 6.00036e-42 | 141.1 | 2.9e-23 | 2.8e-20 | 71.7 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 2 | Telomere_Sde2 | 77 | 152 | 1.7e-10 | 40.8 | 4.8e-07 | 0.00047 | 19.8 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 2 | ubiquitin | 82 | 150 | 0.0 | 235.8 | 3.4e-38 | 3.3e-35 | 119.2 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 2 | TUG-UBL1 | 85 | 128 | 5.3e-06 | 26.2 | 0.00011 | 0.11 | 12.3 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 2 | Rad60-SLD_2 | 86 | 147 | 9.4e-08 | 31.9 | 2.2e-05 | 0.022 | 14.6 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 2 | Ubiquitin_2 | 87 | 145 | 9.1e-15 | 54.6 | 1.0e-08 | 1.0e-05 | 25.6 |
| pfu_aug2.0_205.1_17115.t1 | 2 | 2 | DUF2407 | 89 | 134 | 1.9e-06 | 27.9 | 8.7e-05 | 0.087 | 13.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_205.1_17115.t1 | gi|350537349|ref|NP_001232755.1| | putative ubiquitin C variant 4 [Taeniopygia guttata] | 0.0 |
| pfu_aug2.0_205.1_17115.t1 | gi|701352290|ref|XP_009983603.1| | PREDICTED: polyubiquitin isoform X14 [Tauraco erythrolophus] | 0.0 |
| pfu_aug2.0_205.1_17115.t1 | gi|209875527|ref|XP_002139206.1| | ubiquitin family protein [Cryptosporidium muris RN66] | 0.0 |
| pfu_aug2.0_205.1_17115.t1 | gi|71033201|ref|XP_766242.1| | ubiquitin [Theileria parva strain Muguga] | 0.0 |
| pfu_aug2.0_205.1_17115.t1 | gi|510910044|ref|XP_004833160.1| | ubiquitin family member protein [Babesia equi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_205.1_17115.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_205.1_17115.t1 atgcaaattttcgtgaaaactctcactggcaaaacaatcacactcgaagttgagccctcagacactatcgaaaatgtaaa ggctaaaatccaggacaaagagggaatccccccagatcagcagcgtttgatctttgccggaaaacagcttgaagatggcc gcactctgtctgattacaatatacagaaagagtcaactctgcatttggttttgcgtcttagaggaggaatgcaaattttt gtgaaaactctcaccggcaaaacaatcacacttgaagttgagccctcagacactatcgaaaacgtaaaggctaaaatcca ggacaaagagggaatccccccagatcagcagcgtttgatctttgccgggaaacaacttgaagatggccgcactctgtccg attacaacatccagaaagagtcaactctccatttggtccttcgtttgagaggaggaaattga |
|
Protein
| Protein ID | pfu_aug2.0_205.1_17115.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_205.1_17115.t1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGN |
|