Gene
| Gene Model ID | pfu_aug2.0_205.1_17116 |
|---|---|
| Locus | scaffold205.1 : 198570 ... 200579 : - |
| To GenomeBrowser | scaffold205.1:198570..200579 |
| Genes list of scaffold | scaffold205.1 |
| Synonym | pfu_aug1.0_2615.1_23034 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ubiquitin family protein | GO:0005737 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_205.1_17116.t1 | 3 | 1 | Rad60-SLD | 1 | 71 | 0.0 | 174.4 | 1.4e-20 | 9.7e-18 | 63.6 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 1 | Telomere_Sde2 | 1 | 76 | 1.9e-13 | 50.4 | 4.7e-05 | 0.033 | 13.8 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 1 | ubiquitin | 6 | 74 | 0.0 | 299.5 | 2.6e-32 | 1.9e-29 | 100.8 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 1 | Ubiquitin_2 | 11 | 69 | 1.2e-14 | 54.2 | 6.9e-06 | 0.0049 | 17.0 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 1 | GABP-alpha | 12 | 71 | 6.5e-07 | 29.2 | 3.3e-05 | 0.023 | 14.6 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 1 | Rad60-SLD_2 | 19 | 71 | 1.3e-07 | 31.5 | 0.0016 | 1.1 | 9.1 |
| pfu_aug2.0_205.1_17116.t1 | 2 | 1 | DUF2407 | 38 | 56 | 2.7e-06 | 27.4 | 0.011 | 7.5 | 6.8 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 2 | Rad60-SLD | 77 | 147 | 0.0 | 174.4 | 1.7e-20 | 1.2e-17 | 63.2 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 2 | Telomere_Sde2 | 77 | 152 | 1.9e-13 | 50.4 | 7.0e-06 | 0.0049 | 16.5 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 2 | ubiquitin | 82 | 150 | 0.0 | 299.5 | 2.4e-34 | 1.7e-31 | 107.4 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 2 | GABP-alpha | 87 | 146 | 6.5e-07 | 29.2 | 0.002 | 1.4 | 8.9 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 2 | Ubiquitin_2 | 88 | 145 | 1.2e-14 | 54.2 | 5.2e-08 | 3.7e-05 | 23.9 |
| pfu_aug2.0_205.1_17116.t1 | 2 | 2 | DUF2407 | 90 | 138 | 2.7e-06 | 27.4 | 0.00032 | 0.23 | 11.7 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 2 | Rad60-SLD_2 | 114 | 147 | 1.3e-07 | 31.5 | 0.00017 | 0.12 | 12.2 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 3 | Rad60-SLD | 153 | 223 | 0.0 | 174.4 | 3.1e-19 | 2.2e-16 | 59.2 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 3 | Telomere_Sde2 | 153 | 228 | 1.9e-13 | 50.4 | 6.3e-06 | 0.0045 | 16.6 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 3 | ubiquitin | 158 | 226 | 0.0 | 299.5 | 9.1e-33 | 6.4e-30 | 102.3 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 3 | Ubiquitin_2 | 163 | 221 | 1.2e-14 | 54.2 | 7.8e-06 | 0.0055 | 16.9 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 3 | GABP-alpha | 164 | 222 | 6.5e-07 | 29.2 | 0.00047 | 0.34 | 10.9 |
| pfu_aug2.0_205.1_17116.t1 | 3 | 3 | Rad60-SLD_2 | 192 | 223 | 1.3e-07 | 31.5 | 0.0025 | 1.8 | 8.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_205.1_17116.t1 | gi|294887015|ref|XP_002771956.1| | polyubiquitin, putative [Perkinsus marinus ATCC 50983] | 0.0 |
| pfu_aug2.0_205.1_17116.t1 | gi|118370600|ref|XP_001018501.1| | polyubiquitin [Tetrahymena thermophila SB210] | 0.0 |
| pfu_aug2.0_205.1_17116.t1 | gi|471226990|ref|XP_004032518.1| | ubiquitin family protein, putative [Ichthyophthirius multifiliis] | 0.0 |
| pfu_aug2.0_205.1_17116.t1 | gi|470363018|ref|XP_004365491.1| | polyubiquitin 5 [Capsaspora owczarzaki ATCC 30864] | 0.0 |
| pfu_aug2.0_205.1_17116.t1 | gi|118370594|ref|XP_001018498.1| | polyubiquitin [Tetrahymena thermophila SB210] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_205.1_17116.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_205.1_17116.t1 atgcagatctttgtaaagactttaactggaaagacgatcaccattgacgttgaggccgcggaggaggtcaaaaaggtgaa agaaaaaatcatggagaaggaaggaatccctgtagaccagcagagattaatatttgcaggtaaacaattagaggatgata ggtccttgctggattataacatccaaaaggagtctacacttcatctggtgctccgactcagaggagggatgcagatcttt gtgaaaacactcactggtaaaaccatcactctagatgtagatgaagatgatagcatagagaacgtgaaaaagaagattca agacaaggagggaataccacctgatcagcaacgcttgatttttgccgggaaacagctcgaggacgatcggcaactgaaag cttataacatacaaaaagagtcaactctccacttggtgctccgtcttaggggaggaatgcaaatcttcgtgaagacactt acaggaaagacaattactttaaatgtagagggcgatgacagtatcgaaaatgttaaaaagaagatccttgaaaaagaggg aataccccttgaccaacaacgtttgatctttgccgggaagcaactcgaggatcaccgcatactgagcgactacaacatac agaaggagtccacgcttcacttggtactccgtttgagagggggtgcgtaa |
|
Protein
| Protein ID | pfu_aug2.0_205.1_17116.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_205.1_17116.t1 MQIFVKTLTGKTITIDVEAAEEVKKVKEKIMEKEGIPVDQQRLIFAGKQLEDDRSLLDYNIQKESTLHLVLRLRGGMQIF VKTLTGKTITLDVDEDDSIENVKKKIQDKEGIPPDQQRLIFAGKQLEDDRQLKAYNIQKESTLHLVLRLRGGMQIFVKTL TGKTITLNVEGDDSIENVKKKILEKEGIPLDQQRLIFAGKQLEDHRILSDYNIQKESTLHLVLRLRGGA |
|