Gene
| Gene Model ID | pfu_aug2.0_205.1_17118 |
|---|---|
| Locus | scaffold205.1 : 337440 ... 351629 : + |
| To GenomeBrowser | scaffold205.1:337440..351629 |
| Genes list of scaffold | scaffold205.1 |
| Synonym | pfu_aug1.0_35343.1_19557 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| thrombospondin type-1 domain-containing protein 4 isoform x1 | GO:0031012 GO:0044421 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_205.1_17118.t1 | 1 | 1 | ADAM_spacer1 | 76 | 188 | 1.4e-28 | 98.9 | 9.2e-32 | 2.7e-28 | 98.0 |
| pfu_aug2.0_205.1_17118.t1 | 8 | 1 | TSP_1 | 369 | 382 | 4.9e-12 | 45.7 | 0.12 | 360.0 | 1.3 |
| pfu_aug2.0_205.1_17118.t1 | 8 | 2 | TSP_1 | 417 | 445 | 4.9e-12 | 45.7 | 5.0 | 15000.0 | -3.9 |
| pfu_aug2.0_205.1_17118.t1 | 8 | 3 | TSP_1 | 452 | 506 | 4.9e-12 | 45.7 | 7.6e-10 | 2.3e-06 | 27.6 |
| pfu_aug2.0_205.1_17118.t1 | 8 | 4 | TSP_1 | 512 | 549 | 4.9e-12 | 45.7 | 4.8e-06 | 0.014 | 15.4 |
| pfu_aug2.0_205.1_17118.t1 | 8 | 5 | TSP_1 | 576 | 629 | 4.9e-12 | 45.7 | 0.00011 | 0.31 | 11.1 |
| pfu_aug2.0_205.1_17118.t1 | 8 | 6 | TSP_1 | 635 | 659 | 4.9e-12 | 45.7 | 5.4e-07 | 0.0016 | 18.5 |
| pfu_aug2.0_205.1_17118.t1 | 8 | 7 | TSP_1 | 695 | 744 | 4.9e-12 | 45.7 | 2.4e-09 | 7.0e-06 | 26.0 |
| pfu_aug2.0_205.1_17118.t1 | 8 | 8 | TSP_1 | 866 | 884 | 4.9e-12 | 45.7 | 5.0 | 15000.0 | -15.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_205.1_17118.t1 | gi|283135196|ref|NP_001035516.2| | thrombospondin type-1 domain-containing protein 4 isoform a precursor [Mus musculus] | 0.0 |
| pfu_aug2.0_205.1_17118.t1 | gi|568960941|ref|XP_006510968.1| | PREDICTED: thrombospondin type-1 domain-containing protein 4 isoform X2 [Mus musculus] | 0.0 |
| pfu_aug2.0_205.1_17118.t1 | gi|74223913|dbj|BAE23844.1| | unnamed protein product [Mus musculus] | 0.0 |
| pfu_aug2.0_205.1_17118.t1 | gi|27369599|ref|NP_766032.1| | thrombospondin type-1 domain-containing protein 4 isoform b precursor [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_205.1_17118.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_205.1_17118.t1 atggcagatgaatcgagatgtgttttgacgtgcagcgcaatagggttcggattttataagacattttccacgatgaccaa tgggacaatatgtaataaagaaggaacagcagtctgcgtcgacggggaatgtaagaaatttggatgtgatggcgtcatta actccagatcgaggcttgatacgtgtggagtgtgcggtggagatggttcgacgtgtcagatttttgacgaagtgtacagt caaccaaaactggattatggatataacaagataggaacaatacctgccggtgccagaaatattaatataactcagctaag acgaagtagaaactatctcgcattaaaagaaaaagaaggagaatacataatcaatggccacagacgtctatcacgtgacg gtaaatttgatggagtaggaactcattttcgctaccatcgtcgccatcttggacgttgtcctggggaatgcatcgtctct aaaggaccgacatccacggatttagatatcatggtactagcgttttcccataatcctggaattgtttaccaatacagtct tccacatgatttagagacgtcaacactcgattcctcagaatcgtcaagcgagagcgagtctttatctttgtccaaatacg aagcaataatcatacaggacgactttaaaggtcctaaactagaaacatcaacattacaagttacaacatcatttgagaaa gagtcggacgaagaaaatttcggatctgatagtgaagaatcatcgggcaacggagaagaagaggatatcgatggtaataa attaatacagacagcatataatgtgaccattggttctgacgggaggacaaaggtgtcacggatacagacaattcaacaag aaaggcgagtacggcaaccgccatctctgagtggcaacagagctatgcctgggtatacacagagcttcaggttcatagac agaatgatcaataaacacaaaaacaatgacagaataaacagcataaattccgttcaggctgataaaaatcgacaaaataa cagagttattcctggacaagggaacagaagagcaagacggggatacagttggaaaatcactggttacaccccgtgcaaca aaccgtgtggtactggtacaaagaaaccttttattgagtgtcgctttaacagacgccgagtgtcggagtcttactgcagg gacttgaacaagccgtcggaaaatgtagttccctgtaatacccaatcctgtagaggacgccgagtgtcggagtcgtactg cagggacttgaacaagccgtcggaaaatgtagttccctgtaatacccaatcctgtagaggcatgtggcagccgtctgatt ggtcagcttgcagtgttacgtgtgggagaggtactcagtctaggacgctgacctgtgtctatcaaatggcgcctacaatg tacgcccagatagaggacagcgactgtaatggattaccccgaccagacactacacaaatatgtcaaataaatgactgtaa ccaatggcaggccgatcagtggacaacgtgttctgtctcatgtggcacagggaggaagtctcgtcgtgtgttctgtcagt ctgaggggaggagggtgagagatgatttctgtaacggcatggagaaacccatggcagattccgaatgtgatatgggtaac tgtgagagaacgtctagtttcctggtcagcatgcgggcatggtactttacggagtggactgatacgtgtcccgtggattg tggtgcaggtaaacaaaccagaaaggtactctgtttgggagaagatatcaacacggatccaacaaagagctgcaccgtac agagcaaaccagaaagttacagagagtgtaaatcttccaagagatgtcaacctcagtggtttacaggaccatggaataag tgcaatacaagttgtggtgacgggtaccagtcacgtgatgtagtatgtgtgaggaaggagagtgttcaaggatattcggt ggttccagattatttctgtgtcgacagtaaaccagagtacgagaaacaatgtaatttaccacgatgtccggcggaatggt acacgtccgactggggagagtgttcggttacttgtggaaacggacgcaagtccagaaatataatgtgtgtagacgacaat ggtcagaaaagtgcaaattgcccagactacgagagaccccaggatcaagaagaatgtaggaatctaccatgtagattcga atccagaaattctgtaacaattgagagacctgtttctgataaatatagacctcagataccaccgaatcgccggactggtg tagtcagtagacgcctacccacgaaaactagtgatgacattcgaagaacgttgatgcatagacaacaaaatagacaaatt caacaacaaaataggcaaattcaacaacaaaatagacaacttcaacaacaaaatagacaaacacaacaacaaaatagaca aacacaacatcgtaaacaaagtacacgtagaaatatccaacaacaacgtaggcatcacagacaacagcagcggactagat cacaacaaagacgacagagacatcatcaactaaatcgtcagagacatcagacgacaggatcacgtgttcaaggagagcaa tgtcgtgaccagtataataaatgtgacatgattaaggagaaaaacttatgtggacattattattatgaggtatnatga |
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Protein
| Protein ID | pfu_aug2.0_205.1_17118.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_205.1_17118.t1 MADESRCVLTCSAIGFGFYKTFSTMTNGTICNKEGTAVCVDGECKKFGCDGVINSRSRLDTCGVCGGDGSTCQIFDEVYS QPKLDYGYNKIGTIPAGARNINITQLRRSRNYLALKEKEGEYIINGHRRLSRDGKFDGVGTHFRYHRRHLGRCPGECIVS KGPTSTDLDIMVLAFSHNPGIVYQYSLPHDLETSTLDSSESSSESESLSLSKYEAIIIQDDFKGPKLETSTLQVTTSFEK ESDEENFGSDSEESSGNGEEEDIDGNKLIQTAYNVTIGSDGRTKVSRIQTIQQERRVRQPPSLSGNRAMPGYTQSFRFID RMINKHKNNDRINSINSVQADKNRQNNRVIPGQGNRRARRGYSWKITGYTPCNKPCGTGTKKPFIECRFNRRRVSESYCR DLNKPSENVVPCNTQSCRGRRVSESYCRDLNKPSENVVPCNTQSCRGMWQPSDWSACSVTCGRGTQSRTLTCVYQMAPTM YAQIEDSDCNGLPRPDTTQICQINDCNQWQADQWTTCSVSCGTGRKSRRVFCQSEGRRVRDDFCNGMEKPMADSECDMGN CERTSSFLVSMRAWYFTEWTDTCPVDCGAGKQTRKVLCLGEDINTDPTKSCTVQSKPESYRECKSSKRCQPQWFTGPWNK CNTSCGDGYQSRDVVCVRKESVQGYSVVPDYFCVDSKPEYEKQCNLPRCPAEWYTSDWGECSVTCGNGRKSRNIMCVDDN GQKSANCPDYERPQDQEECRNLPCRFESRNSVTIERPVSDKYRPQIPPNRRTGVVSRRLPTKTSDDIRRTLMHRQQNRQI QQQNRQIQQQNRQLQQQNRQTQQQNRQTQHRKQSTRRNIQQQRRHHRQQQRTRSQQRRQRHHQLNRQRHQTTGSRVQGEQ CRDQYNKCDMIKEKNLCGHYYYEVX |
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