Gene
| Gene Model ID | pfu_aug2.0_2055.1_18665 |
|---|---|
| Locus | scaffold2055.1 : 77177 ... 80385 : - |
| To GenomeBrowser | scaffold2055.1:77177..80385 |
| Genes list of scaffold | scaffold2055.1 |
| Synonym | pfu_aug1.0_18149.1_47182 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| integrase core domain protein | GO:0003824 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2055.1_18665.t1 | 1 | 1 | RVT_1 | 583 | 744 | 4.5e-17 | 62.1 | 2.9e-20 | 8.6e-17 | 61.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2055.1_18665.t1 | gi|514682659|ref|XP_004988912.1| | hypothetical protein PTSG_12973 [Salpingoeca rosetta] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2055.1_18665.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2055.1_18665.t1 atgaattcaccaacatctgggaacatgagtaccagtaatgtgccagtaaagcgtactttcagtggtgacagcagagacac ttggtctgaattcataaggtacagttccttgaataattgggatgaagatagaaaacggaagatcttcttcactgttctca ggggccaagctgaatcgtttgcatacggacttccagatgaagagagaaacagttggattgctttgaagggaaggatgaat gataggtttggacaccatacaatgaaggattatattgccgaggcaaggcttcgcactaagacatcatcggaatcattcag agattttggacaagcgcttgaagatttatatcgtagatcatatccaaacaatcgtgaatatattgccgagagcagtatga agatttttatagacaattgcagcgaacgagaagactttagattagctgtaaagggaactcgaccaaagacattacaagat gctgttacggctgcaatgcaagaagaatacatcagagtaagtgaaagccgtaagtctgatatgcaaaaggacatacgaag gccagtttttgcattaaaacatgatgcgcgggaaaactatggacctttcgaaaatagacagaacctcaagttccaagaca aatcatcgaatgaaagccgaagtgcagaaaataagaacattgataaaaaaagtgtttcttctgattctgatagttttaaa atctatagccttaatgtgaaaaggagatctggaatgatcatggatgggcttatagaaggtagtccaatagaatggaagat ggatacaggagccagtagaacattcataactgaagatacgtattacagtattcttccaattacaaggccgagtctgcaag aagtgcggaacaaatttgaaacagcggacgggagtaaattgaatctacttggaactgcgtttatgactttgacatttgga aattcttgtgtgattttgagagtatatgtaggtggagtaaagtgtaacctacttggacaggatttcttatcaatgtttaa gtgcaactgggattacgagacgaatcatcttgtgatgaacatagatctaaggataagtgaaacccccgacgatgtgtgtg ttgttatgtttaaagaaaacacatatgtgccttccggttgtgaaacagtgataaaggctagtttaaaaggaaaaccgacg tgttgtcagggaatgttacttcaatttaaacggtttgtgcattctcatggcttaattgtggctctacagatcatgaatac acaaaatgatattgtgtttgtgcgagtgtataatgctgatgtttcagatgtttggataaataaacacactgaaatagctc aagtgataactgtgaatttcatcagtgagcctatggaatcatgtagtgctactgaagtgaagcgaaacggaaattccgga gaattacccgatcacttatacgagttatatgatgacggttgtagggagttgtcacatgaagaagcgatgaagtttaagga attcctgatagagaggaaagattcctttgctgttcctggagagaaaatggaacgtgcgactatcggggagcatgtaatca aactgagcgatgaaaccccgtttaaggagccaccgaggagaattccgatattcaagagggacactctcgataatgagata gagaaattaaaggagcacggacttatagagaagtctaacagcccttggtcttctcccctcgtgttagtccaaaagaagga caaaacctggagattatgtgtagactatcgccggttaaatgcacgcactattaaagacgcttatccgataccaagagtaa cagatgacttggaagcattatcaggatcaaagtggtttaggtctttggatctttatatggcttaccaccaaatatccatg cgtgaaagtgataaagaaaaaacggtgtttgcgactcggagaggaggattatatcagtatacggtaatgccatttggact ctgtaatgcgcccgcaacatttcagcgcgttatagaaaaagcactttatggactacagtggaatgtagctgtactgtacc tcgatgacatcatagtgtacggaggtaaaacattcgatgggcacttggataattcaaacctagtgttggatcaattaaag gccgttaacctcaagttaaaagctaaaaagtgtagtttctttaagaaggaagttacatttccgggccatatcgtatctca gaagggaattatgacagatcgcaataaagtagatgctgtcaggaactggaaaagacccgaaagcgttagtgaattaagaa gctttctgggcttagctacgtactacagacgattcatcaaagactttgcaaaaacagcttcgtgtttacacgcattgact agcaagaataataagtggatgtggaccactgaatgtgaattttcatttcgaactttgaaagaaaagttaacatcggctcc aattcttggttatccatacgtaaatggcggtagcttcattttggacgtggatgccagtgataatgcaataggtgctgttt tgtcccagatacaagataatgatgagagagttattgcgtatggaagcagaacactaacaagggcggagaagaactattgt gtaacacgtaaagaaatgttggcagttgatttctttataaaacattttagacattatctgtcgggacgagaattcatatt acagacagaccaagcatcccttgtatggttacatcgttttaaggaaccagacggacagataagtcgttggcttcaatag |
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Protein
| Protein ID | pfu_aug2.0_2055.1_18665.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2055.1_18665.t1 MNSPTSGNMSTSNVPVKRTFSGDSRDTWSEFIRYSSLNNWDEDRKRKIFFTVLRGQAESFAYGLPDEERNSWIALKGRMN DRFGHHTMKDYIAEARLRTKTSSESFRDFGQALEDLYRRSYPNNREYIAESSMKIFIDNCSEREDFRLAVKGTRPKTLQD AVTAAMQEEYIRVSESRKSDMQKDIRRPVFALKHDARENYGPFENRQNLKFQDKSSNESRSAENKNIDKKSVSSDSDSFK IYSLNVKRRSGMIMDGLIEGSPIEWKMDTGASRTFITEDTYYSILPITRPSLQEVRNKFETADGSKLNLLGTAFMTLTFG NSCVILRVYVGGVKCNLLGQDFLSMFKCNWDYETNHLVMNIDLRISETPDDVCVVMFKENTYVPSGCETVIKASLKGKPT CCQGMLLQFKRFVHSHGLIVALQIMNTQNDIVFVRVYNADVSDVWINKHTEIAQVITVNFISEPMESCSATEVKRNGNSG ELPDHLYELYDDGCRELSHEEAMKFKEFLIERKDSFAVPGEKMERATIGEHVIKLSDETPFKEPPRRIPIFKRDTLDNEI EKLKEHGLIEKSNSPWSSPLVLVQKKDKTWRLCVDYRRLNARTIKDAYPIPRVTDDLEALSGSKWFRSLDLYMAYHQISM RESDKEKTVFATRRGGLYQYTVMPFGLCNAPATFQRVIEKALYGLQWNVAVLYLDDIIVYGGKTFDGHLDNSNLVLDQLK AVNLKLKAKKCSFFKKEVTFPGHIVSQKGIMTDRNKVDAVRNWKRPESVSELRSFLGLATYYRRFIKDFAKTASCLHALT SKNNKWMWTTECEFSFRTLKEKLTSAPILGYPYVNGGSFILDVDASDNAIGAVLSQIQDNDERVIAYGSRTLTRAEKNYC VTRKEMLAVDFFIKHFRHYLSGREFILQTDQASLVWLHRFKEPDGQISRWLQ |
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