Gene
| Gene Model ID | pfu_aug2.0_2064.1_15376 |
|---|---|
| Locus | scaffold2064.1 : 10328 ... 12535 : - |
| To GenomeBrowser | scaffold2064.1:10328..12535 |
| Genes list of scaffold | scaffold2064.1 |
| Synonym | pfu_aug1.0_18110.1_54462 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2064.1_15376.t1 | 2 | 1 | zf-B_box | 14 | 58 | 3.1e-12 | 46.1 | 1.6e-07 | 0.00015 | 21.5 |
| pfu_aug2.0_2064.1_15376.t1 | 2 | 2 | zf-B_box | 74 | 112 | 3.1e-12 | 46.1 | 5.0e-10 | 4.6e-07 | 29.6 |
| pfu_aug2.0_2064.1_15376.t1 | 4 | 1 | NHL | 405 | 418 | 7.4e-06 | 25.6 | 0.47 | 430.0 | 1.1 |
| pfu_aug2.0_2064.1_15376.t1 | 4 | 2 | NHL | 464 | 477 | 7.4e-06 | 25.6 | 0.74 | 690.0 | 0.5 |
| pfu_aug2.0_2064.1_15376.t1 | 4 | 3 | NHL | 497 | 521 | 7.4e-06 | 25.6 | 2.5e-08 | 2.4e-05 | 24.0 |
| pfu_aug2.0_2064.1_15376.t1 | 4 | 4 | NHL | 543 | 558 | 7.4e-06 | 25.6 | 0.0017 | 1.6 | 8.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2064.1_15376.t1 | gi|260830144|ref|XP_002610021.1| | hypothetical protein BRAFLDRAFT_99973 [Branchiostoma floridae] | 2.0e-12 |
| pfu_aug2.0_2064.1_15376.t1 | gi|556969989|ref|XP_005993667.1| | PREDICTED: tripartite motif-containing protein 45 isoform X1 [Latimeria chalumnae] | 3.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_2064.1_15376.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2064.1_15376.t1 atgagcgaccaaggcgccacagcgttccccgtccagacaatggtggaatgtggaatctgtggaggaacctttaacatcga ttggttctgtaagacctgtggtggatccctttgtgacacatgcaatcgggctcaccagacaacattcctcttcagaaacc atatagtggtaccacgaaccgttgaagtcctaaggctgcatggtcccgcgaagattgccgaaatttgccgaatacatccg acgaaagaaatatctacctactgcaacgactgcaaaattccatgctgtattttatgcctgattgaaaagcatcaacccca cgcattctgtccaatagaggacaagtatctatctgcagaaaaaaatctggatcagtataccagggagttgcaaacagatg ttaaacctagcctggatgccttaaaagacagtttgaaacatcgtcttaaaaagcacgatgaacagattgaaaaagaaaag gacgagataaacacattccgacatactctcaaacagaaagtagatgaatcatgtgatctgcttttgagagaactcaacca agctaaacaagattttagaaactttgaaaaagaactcgactctagtaaacaaaaactagatcagttgataaaagatctag agattatgataggggaggggaaattagatatcatagaatactctccacccacccaaaaatctctcatcccggcgtcccct ttgcgagtactgaaagtaccaaaatttgtacctggcagagatcttattggtgtgatacaaaccaagatagggagagtaga atttcatgatcaaatctcagacaatgaggagacgaacgaatcctcaaatactgcactagatatggatatcagtgtacaga aatctttgattcaggtcaaaggtattgacaaagctgatatcgaagtaacaaaggtcaaatcgttaaaaagtaagattggg gttacatctcttacttctgcctgtaataactcagcatgggttatctatcatgatagtaataccatgtatctgtatgatag taatggtgatgtggtcacgtcagttaaagtaaagaacagtcaaggcatcaatgatatggtcatcacaagttcaggggata tgatagtggcttgtagggataagacagtaagacgtgtgtcagtaggtggtgaggtgtctacactgataagccaatgggat tatagttctgaaggtgtgtgtctgactgataaggaagagattgtggtgtgtatgagacgtcttttgggtgggggccacgt ggttgtgtactctcctgatggacgtagtaagctacgtgagataaggggagtagacagtcagggtaaaccacagatcacaa gcccttaccgtgtggtatgttatggtgaggatctgtgtgttgtggatgtaggtagaaatgtagtgtgtgtggatgagagt gataacgttaggtgggtgtacgatggtaagcaggccaagctggggaagttattttttccacatggtatatgtgtagacaa gtaccacaacttgctggtcactgataaatacaataactgtgtacattatatagacagggagggaggacatatacaggtta taatgacacaggacaagacagggttagcgggaccatgggggatatgtgtagatgatgagacagaccaggtgtggatgggg aattttgatggtgatgttgcaatagcgaaatatttaaagtaa |
|
Protein
| Protein ID | pfu_aug2.0_2064.1_15376.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2064.1_15376.t1 MSDQGATAFPVQTMVECGICGGTFNIDWFCKTCGGSLCDTCNRAHQTTFLFRNHIVVPRTVEVLRLHGPAKIAEICRIHP TKEISTYCNDCKIPCCILCLIEKHQPHAFCPIEDKYLSAEKNLDQYTRELQTDVKPSLDALKDSLKHRLKKHDEQIEKEK DEINTFRHTLKQKVDESCDLLLRELNQAKQDFRNFEKELDSSKQKLDQLIKDLEIMIGEGKLDIIEYSPPTQKSLIPASP LRVLKVPKFVPGRDLIGVIQTKIGRVEFHDQISDNEETNESSNTALDMDISVQKSLIQVKGIDKADIEVTKVKSLKSKIG VTSLTSACNNSAWVIYHDSNTMYLYDSNGDVVTSVKVKNSQGINDMVITSSGDMIVACRDKTVRRVSVGGEVSTLISQWD YSSEGVCLTDKEEIVVCMRRLLGGGHVVVYSPDGRSKLREIRGVDSQGKPQITSPYRVVCYGEDLCVVDVGRNVVCVDES DNVRWVYDGKQAKLGKLFFPHGICVDKYHNLLVTDKYNNCVHYIDREGGHIQVIMTQDKTGLAGPWGICVDDETDQVWMG NFDGDVAIAKYLK |
|