Gene
| Gene Model ID | pfu_aug2.0_2082.1_08735 |
|---|---|
| Locus | scaffold2082.1 : 89208 ... 90475 : - |
| To GenomeBrowser | scaffold2082.1:89208..90475 |
| Genes list of scaffold | scaffold2082.1 |
| Synonym | pfu_aug1.0_12486.1_03244 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2082.1_08735.t1 | 2 | 1 | zf-B_box | 17 | 60 | 1.3e-13 | 50.5 | 5.7e-09 | 1.7e-05 | 24.6 |
| pfu_aug2.0_2082.1_08735.t1 | 2 | 2 | zf-B_box | 73 | 109 | 1.3e-13 | 50.5 | 3.1e-11 | 9.3e-08 | 31.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2082.1_08735.t1 | gi|657793330|ref|XP_008323565.1| | PREDICTED: uncharacterized protein LOC103389779 isoform X1 [Cynoglossus semilaevis] | 2.0e-13 |
| pfu_aug2.0_2082.1_08735.t1 | gi|657793332|ref|XP_008323566.1| | PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like isoform X2 [Cynoglossus semilaevis] | 3.0e-13 |
| pfu_aug2.0_2082.1_08735.t1 | gi|657793334|ref|XP_008323567.1| | PREDICTED: tripartite motif-containing protein 29-like isoform X3 [Cynoglossus semilaevis] | 3.0e-13 |
| pfu_aug2.0_2082.1_08735.t1 | gi|597760878|ref|XP_007244434.1| | PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like [Astyanax mexicanus] | 3.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_2082.1_08735.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2082.1_08735.t1 atggcgtttgattcgtcaaggatagggacacaagaggcaataataaaaccgtgtgatttatgtgaagatgatgaaaacgt aaactggttctgtagagattgtatccagaatctttgtgaaaactgcaagaaaactcaccttaagatcgcaacttgcaaaa atcatcgactagtttcgattttagagggcgtcgtcattcagaagataaacgtttcaaacctttgtcatgaacacgatgaa ccttttaccttcttttgtcgaaaatgcgcggagaacatttgttcaatatgtctttcattggtccataaaaagcatgagtt tgtagatctacgtaatttacaatcggaattacaaatcaaactagaaaatgtcatcaaggacaaagaggatgaacgattgg aaataagcaacaacaaagatgaatttgaaaaatatgcaaataaaagcaaggaaacgcttgaaaaaggctgtgctactata gattatgcaatgaaagctttacataaagctgttgatgaagaaggtcaaaacctgaaagattttttaatagaaacaacaga aaagcaaattacagaaatcgatgaacttacacaaaaacttgaaggaaagaagaatgagacgatccaaacagttaaacaag aacttgcactacaaactgaatcaaattttaatcagttcgtcaaaacatctattgctaaacttcattctatacagcctttg aggtatgcccttgaaatgagtactacatttgttgctggaagaaccaataacgatcttattgcggaaatgattggcaaaac ttgttggagaagtgaatataagagaactagatga |
|
Protein
| Protein ID | pfu_aug2.0_2082.1_08735.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2082.1_08735.t1 MAFDSSRIGTQEAIIKPCDLCEDDENVNWFCRDCIQNLCENCKKTHLKIATCKNHRLVSILEGVVIQKINVSNLCHEHDE PFTFFCRKCAENICSICLSLVHKKHEFVDLRNLQSELQIKLENVIKDKEDERLEISNNKDEFEKYANKSKETLEKGCATI DYAMKALHKAVDEEGQNLKDFLIETTEKQITEIDELTQKLEGKKNETIQTVKQELALQTESNFNQFVKTSIAKLHSIQPL RYALEMSTTFVAGRTNNDLIAEMIGKTCWRSEYKRTR |
|