Gene
| Gene Model ID | pfu_aug2.0_2086.1_21926 |
|---|---|
| Locus | scaffold2086.1 : 65536 ... 111025 : - |
| To GenomeBrowser | scaffold2086.1:65536..111025 |
| Genes list of scaffold | scaffold2086.1 |
| Synonym | pfu_aug1.0_4712.1_37950 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 5-hydroxytryptamine receptor 4 | GO:0004930 GO:0007186 GO:0016021 GO:0044464 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2086.1_21926.t1 | 1 | 1 | 7TM_GPCR_Srsx | 69 | 348 | 2.6e-10 | 39.9 | 1.3e-13 | 5.0e-10 | 38.9 |
| pfu_aug2.0_2086.1_21926.t1 | 1 | 1 | 7tm_1 | 73 | 334 | 0.0 | 230.4 | 0.0 | 0.0 | 230.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2086.1_21926.t1 | gi|359279969|ref|NP_001240691.1| | 5-HT4 receptor [Aplysia californica] | 0.0 |
| pfu_aug2.0_2086.1_21926.t1 | gi|676494259|ref|XP_009066504.1| | hypothetical protein LOTGIDRAFT_155726 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2086.1_21926.t1 | gi|585668472|ref|XP_006817500.1| | PREDICTED: 5-hydroxytryptamine receptor 4-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_2086.1_21926.t1 | gi|602669846|ref|XP_007440455.1| | PREDICTED: 5-hydroxytryptamine receptor 4-like, partial [Python bivittatus] | 0.0 |
| pfu_aug2.0_2086.1_21926.t1 | gi|637268676|ref|XP_008102861.1| | PREDICTED: 5-hydroxytryptamine receptor 4 isoform X2 [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2086.1_21926.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2086.1_21926.t1 atgaaaccaactgacataaagttgtattcgaatgacagctatgtcttcccagggatgtacaactttacaactaacacgtc tacagaccagctgacgtcaggattgaattgtgacgtcattttagcggataaagctccgcctccacctgtttattccaagg aggtcagtacgttcataggagctgtactttcggtgttccctttagtgacactgtccggaaattccctagttatcatagct gtttttacgcataaacggctaaggacgattaccaatgccttcgtcgtgtcgctgtccgtcgccgacttcttagtggctct tttagtgatgccgttcgctgtatatcaacaattcaacgacaaaaaatggggtttaggtcactatatgtgtaagatagtca cgtgtctagatataatgaccaccacgtcgtccataatgcacctgtcctgtttggccgtggacaggtacctggctatatgc cggccatttgtacacgagagactcacaaataggattgtatgtgctatgttaacatcatgttggatattacccatgttcat ttcgtttcttccaatattaaatgaatggaatttaataggaatagaggatgtgcatacgtgtatgttcggtgaatacgaca cacactgtggtctgatagtgaacattcccttcgcgcttatatgttctaccatcgcattttacattcccgccatttttatg atcatctgtaatatcaaaatatacctcgcagcaagaaagcaagcacaccatatcagaacattagaagcatcattacataa acataacaaaaggaaattaaagcaggagactaaggccgctaaaactattggtataattatgggttgtttctgtgtctgct ggtttccgtttttcatagtaaacgttatagacccgctgataggccataaaataacgtatgtcccgtggacaatagctcta tggttaggatatctcaattccatgctaaatccatttctctactataatttcaatcgatcatttaaaacggctttcaatcg tttattgacttgtaaggtgtgtcagggagtgcgtgagttcgaggagacggatccgcccagcaccaccagctaccataacg gcacgggacaccactgtaacgccttgttacccacagaaatgtccactttaaccctgtgccattaa |
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Protein
| Protein ID | pfu_aug2.0_2086.1_21926.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2086.1_21926.t1 MKPTDIKLYSNDSYVFPGMYNFTTNTSTDQLTSGLNCDVILADKAPPPPVYSKEVSTFIGAVLSVFPLVTLSGNSLVIIA VFTHKRLRTITNAFVVSLSVADFLVALLVMPFAVYQQFNDKKWGLGHYMCKIVTCLDIMTTTSSIMHLSCLAVDRYLAIC RPFVHERLTNRIVCAMLTSCWILPMFISFLPILNEWNLIGIEDVHTCMFGEYDTHCGLIVNIPFALICSTIAFYIPAIFM IICNIKIYLAARKQAHHIRTLEASLHKHNKRKLKQETKAAKTIGIIMGCFCVCWFPFFIVNVIDPLIGHKITYVPWTIAL WLGYLNSMLNPFLYYNFNRSFKTAFNRLLTCKVCQGVREFEETDPPSTTSYHNGTGHHCNALLPTEMSTLTLCH |
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