Gene
| Gene Model ID | pfu_aug2.0_209.1_30421 |
|---|---|
| Locus | scaffold209.1 : 74058 ... 100495 : - |
| To GenomeBrowser | scaffold209.1:74058..100495 |
| Genes list of scaffold | scaffold209.1 |
| Synonym | pfu_aug1.0_11483.1_24900 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_209.1_30421.t1 | 3 | 1 | Fringe | 1 | 159 | 0.0 | 361.7 | 0.0 | 0.0 | 174.0 |
| pfu_aug2.0_209.1_30421.t1 | 2 | 1 | Galactosyl_T | 9 | 47 | 5.5e-07 | 29.3 | 3.0e-05 | 0.11 | 12.0 |
| pfu_aug2.0_209.1_30421.t1 | 3 | 2 | Fringe | 159 | 179 | 0.0 | 361.7 | 0.01 | 39.0 | 3.3 |
| pfu_aug2.0_209.1_30421.t1 | 3 | 3 | Fringe | 178 | 358 | 0.0 | 361.7 | 0.0 | 0.0 | 184.0 |
| pfu_aug2.0_209.1_30421.t1 | 2 | 2 | Galactosyl_T | 198 | 288 | 5.5e-07 | 29.3 | 3.6e-06 | 0.013 | 15.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_209.1_30421.t1 | gi|478517581|ref|XP_004433023.1| | PREDICTED: beta-1,3-N-acetylglucosaminyltransferase radical fringe, partial [Ceratotherium simum simum] | 0.0 |
| pfu_aug2.0_209.1_30421.t1 | gi|755793304|ref|XP_006940763.2| | PREDICTED: beta-1,3-N-acetylglucosaminyltransferase radical fringe, partial [Felis catus] | 0.0 |
| pfu_aug2.0_209.1_30421.t1 | gi|345485506|ref|XP_003425285.1| | PREDICTED: fringe glycosyltransferase isoform X1 [Nasonia vitripennis] | 0.0 |
| pfu_aug2.0_209.1_30421.t1 | gi|548510909|ref|XP_005694437.1| | PREDICTED: beta-1,3-N-acetylglucosaminyltransferase radical fringe, partial [Capra hircus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_209.1_30421.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_209.1_30421.t1 atgaaatcaggaaaaagttggttttgtcatgtcgacgacgacaattaccttaatgttgaccgattgttaacaatgttaag gaattacgacccctctgagctgtggtatttggggagagcgagtcttgaccaccctgttactccaccagaaagaccgaaac tgaaacatgttaagttttggttcgcaacacttggtgctggcgtgtgtctaagcaaaactttagcaaagaaaatgatcaaa catgcaggtgacagaagattcaataacgcttgcgaccatattgcaatgccggacgattgtacgctcggatatatcatcaa ctatcttattggagtaaatcttaccacagtcaaccagttccattctcactttgagaatttaaaagaaataaaggatccag aaaatcaaattacactaggtttcggtggtaatgttatttcaatcaagggatttgatgttaaagacgatcctactagaaga gatttatgttgtaaatttgcgatggagtacgatcactacataagatcaggaaaaagaagagatttatgttgtaaatttgc gatggagtacaattactacataagatcaggaaaaagttggttttgtcatgttgacgatgacaattaccttaatgttgacc tactactacaaatgttaagggggtatgaccccttagagctgtggtatttaggcagagcaagtcgtgatcatccagttacg ccaccaagaaaaaacctggtacgtgtaagatgggaaaacttacatgttaagttttggtttgcaacacttggtgctggtgt ctgtattagtaaagctttagcaaagaaaatgttgccacatgcgagtgatgaaaaatttagcgatgcttgcgatcatactg ggatgccggacgattgtactctcgggtacattatcaatcatcttcttggtgtaaatctcaccactgtcaacaacttccat tctcacatggaaattctaaaggacattaaagatccagaaaatcaaattacactaggtttcagtggtaatgttattacaat taagggatttgatgttaaagaagatccaactaggttcaagtcactgcattgtaaactacatcccaaagtagattattgtt cagctctaaaacaaaatattactaattga |
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Protein
| Protein ID | pfu_aug2.0_209.1_30421.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_209.1_30421.t1 MKSGKSWFCHVDDDNYLNVDRLLTMLRNYDPSELWYLGRASLDHPVTPPERPKLKHVKFWFATLGAGVCLSKTLAKKMIK HAGDRRFNNACDHIAMPDDCTLGYIINYLIGVNLTTVNQFHSHFENLKEIKDPENQITLGFGGNVISIKGFDVKDDPTRR DLCCKFAMEYDHYIRSGKRRDLCCKFAMEYNYYIRSGKSWFCHVDDDNYLNVDLLLQMLRGYDPLELWYLGRASRDHPVT PPRKNLVRVRWENLHVKFWFATLGAGVCISKALAKKMLPHASDEKFSDACDHTGMPDDCTLGYIINHLLGVNLTTVNNFH SHMEILKDIKDPENQITLGFSGNVITIKGFDVKEDPTRFKSLHCKLHPKVDYCSALKQNITN |
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