Gene
| Gene Model ID | pfu_aug2.0_209.1_30425 |
|---|---|
| Locus | scaffold209.1 : 208556 ... 220473 : + |
| To GenomeBrowser | scaffold209.1:208556..220473 |
| Genes list of scaffold | scaffold209.1 |
| Synonym | pfu_aug1.0_15583.1_18233 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_209.1_30425.t1 | 2 | 1 | Nexin_C | 102 | 154 | 8.0e-20 | 71.0 | 0.045 | 220.0 | 1.9 |
| pfu_aug2.0_209.1_30425.t1 | 3 | 1 | PXA | 114 | 114 | 8.2e-19 | 67.8 | 1.3 | 6300.0 | -3.5 |
| pfu_aug2.0_209.1_30425.t1 | 3 | 2 | PXA | 158 | 348 | 8.2e-19 | 67.8 | 1.7e-22 | 8.2e-19 | 67.8 |
| pfu_aug2.0_209.1_30425.t1 | 3 | 3 | PXA | 415 | 439 | 8.2e-19 | 67.8 | 1.5 | 7200.0 | -3.7 |
| pfu_aug2.0_209.1_30425.t1 | 1 | 1 | PX | 597 | 719 | 1.0e-12 | 47.8 | 8.1e-16 | 4.0e-12 | 45.9 |
| pfu_aug2.0_209.1_30425.t1 | 2 | 2 | Nexin_C | 916 | 1025 | 8.0e-20 | 71.0 | 2.3e-22 | 1.1e-18 | 67.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_209.1_30425.t1 | gi|676460777|ref|XP_009055732.1| | hypothetical protein LOTGIDRAFT_232606 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_209.1_30425.t1 | gi|597737731|ref|XP_007231098.1| | PREDICTED: sorting nexin-19-like isoform X1 [Astyanax mexicanus] | 4.06377e-44 |
| pfu_aug2.0_209.1_30425.t1 | gi|634892183|ref|XP_007954810.1| | PREDICTED: sorting nexin-19 [Orycteropus afer afer] | 2.99878e-43 |
| pfu_aug2.0_209.1_30425.t1 | gi|512884816|ref|XP_004896085.1| | 9.99967e-42 | |
| pfu_aug2.0_209.1_30425.t1 | gi|291383573|ref|XP_002708884.1| | PREDICTED: sorting nexin-19 [Oryctolagus cuniculus] | 4.00001e-41 |
Transcript
| Transcript ID | pfu_aug2.0_209.1_30425.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_209.1_30425.t1 atggactcaaacaaacgaaatatttctacatttcttgtcaacataatttcacaccacaagatattttcttctattcaaaa actggtgatattttctgtgtttacagtgatttcatcgtggttgctcggggtgtttacaataacaggaactttggttcttt ctattttgtttagttttcttatctgtcacttactgacatcgataaacagacattataatggcattaaagtccttttagtg ttttacagatctcatttgaaagaaatagtgacagttgttcaatctgtaaatgttttcaagcagtttttgtcaaatatttt atgggagaatgaaaaagataatcatgaacctatagaaaatgcagaaagaaatgaggagaagaatagtaaaccagagcaga atgataagaatcaaatatttgttgctaaaagtacagggcaagcaaacactgaaaatggatgggagacaatgctggaaaat gaaattgcttacttaactggactgattgtccaagatttcattcgtccatggtactgtgtaagggagcagagagaggaaat tgcagaggaatcgcgcatgattcttcatgagggtctgaaacttttcttcagcaatctttcaacaataaatgttcaggact taactagagatattttgttatgttatcaggagcatcttagtatgtttcagatagccagaatgacatataggacccaacct aagaggagacgatcaaacttcagaagggtggaatcacaaagcagaatagtcaatacagcatctaaaaaaattgcatcaat tgaagaggcatttgaaatgaagttttcttatcattctgcagtgtggggcatcgaatatgaatgcaactatgtgaagagtt tgactcatctattagtttcacgtcttctagagaatcatgtgaaaggttgtaaaaccaccaaacttttgctagttgaaatt ctttctagcaatgttttgatacctttgatagaattattatcaaatgcagattttctgcatgaaagtatgataataatttt gtcagatgaagaaccaatagaagtgactgatgacttagatgatgaaaatgacgatgtagatcgtgtacatgtgggcaatg aaataaatgaagtacatgaaagtagtgagttagtagatggtctgacgggtgttactaatacatcaaataccaataccaat gtggtagggagatttcaaaatgaaacagagtgtacagatttgtcatgtgataggcaactaacaagaacacagaattcttt acaatcaaataagcaagaggaggatgtgcaaattaacgggaaaactccagcagagcttgatgttccactaaaagagactg cagaagtagcaaatgaggaaaggaccttggatgaacctgaattaaatgtaataccagcagcaattctctcccctgcacag ccacgtggaaggagccttgaaaggacaatagatgagaatcaaaaacaggactcaactgcagctgggtcaggatctcaggg tacaataacaaggggtggggacagcactaatcaaactcagttacaatcaaagagtccaaggaaaagaaaagaagaatttg tctcaggagtggagttaggagaggaagcaggggcacaggtacctgttcaaagtaaggaagtgagaggagagagtcaggga agtcgggaatctcagggttctgagtgtaaagtaaaatttgctttagactctggtagctatgaagatatagaggagcaaaa agtagaggatcctacagaactgatatttcaggaagttaacattatagatacggaaacaaccaatgaaagtagaagttcaa ctcagtacaccttatatgttgtagagtatgcagcttggtacacaacagatgacaatgtaagaaaattaaggacccaaact gtcaagagaaggttcagagagtttgtcaatctacaaggaagacttgaggataatcctagctacaaggctagtcttaaaga tacaaagaggccaatgcggtggtttaattctctgccttttggaaatatggacaggagcagtataaaaagtaggaaaaatc gcttagaaacttaccttaaggcactaatagtgaaaccagatgtttgtaatggacaagaattaagagagtttttcgggtat gaaggtgatggtcacatagcgtttgtaaggaaggccccagaaaacactctacctaggatagataagatgttgattcggtc tgtctccggagtgattgacaaaataggcgggaaaatggacgagttaacgacacgtgcttccgaggtcctacccagctttt caagtaggaaagatcagacagtgtggactcctagtggaccgtatgacaaagatgaagataatattccattggaatttgga ttcttaaaaaatgagacctggccaatagaagctgatcttgacaaactagcaacaaaatttgacgaagaaaaagcagactg ggtttacgctgaaagtgaatctctgaatgaagaagatagtgtgaatagtcagactgactctaaagatctacttaccaaac aaagtaatgaagttgacgcaaattctgatagcttcgtagatggtactttggaggaacaagctgtggagaatataaatgtt gtcaaggtcaatgagaaggggggtagtttagatgaggatcacagggcagtactagcagatgcagctctgaatgttggtgt ccaggcccttcaagggagggactgttggttatgcagggagagggttgtgtctcttactaaacatctcacagctacagcta ttcaccattggttggagacagagatagatgagttagtgacagaggagagatgtttgctctatatacagaagctaagggag gtaatctggccagaaggggtctttgattcatcaagtcatcgcatcaggtccgataaacaaaaaatggcaactaaaacaca ggcacggaaatgccttgcagaattcttaccaaattttgtaaggggactaatggaccaaggagattactcagtagctatag atgaaatcattgactcactacaacacgagaaactcaacaagtaa |
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Protein
| Protein ID | pfu_aug2.0_209.1_30425.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_209.1_30425.t1 MDSNKRNISTFLVNIISHHKIFSSIQKLVIFSVFTVISSWLLGVFTITGTLVLSILFSFLICHLLTSINRHYNGIKVLLV FYRSHLKEIVTVVQSVNVFKQFLSNILWENEKDNHEPIENAERNEEKNSKPEQNDKNQIFVAKSTGQANTENGWETMLEN EIAYLTGLIVQDFIRPWYCVREQREEIAEESRMILHEGLKLFFSNLSTINVQDLTRDILLCYQEHLSMFQIARMTYRTQP KRRRSNFRRVESQSRIVNTASKKIASIEEAFEMKFSYHSAVWGIEYECNYVKSLTHLLVSRLLENHVKGCKTTKLLLVEI LSSNVLIPLIELLSNADFLHESMIIILSDEEPIEVTDDLDDENDDVDRVHVGNEINEVHESSELVDGLTGVTNTSNTNTN VVGRFQNETECTDLSCDRQLTRTQNSLQSNKQEEDVQINGKTPAELDVPLKETAEVANEERTLDEPELNVIPAAILSPAQ PRGRSLERTIDENQKQDSTAAGSGSQGTITRGGDSTNQTQLQSKSPRKRKEEFVSGVELGEEAGAQVPVQSKEVRGESQG SRESQGSECKVKFALDSGSYEDIEEQKVEDPTELIFQEVNIIDTETTNESRSSTQYTLYVVEYAAWYTTDDNVRKLRTQT VKRRFREFVNLQGRLEDNPSYKASLKDTKRPMRWFNSLPFGNMDRSSIKSRKNRLETYLKALIVKPDVCNGQELREFFGY EGDGHIAFVRKAPENTLPRIDKMLIRSVSGVIDKIGGKMDELTTRASEVLPSFSSRKDQTVWTPSGPYDKDEDNIPLEFG FLKNETWPIEADLDKLATKFDEEKADWVYAESESLNEEDSVNSQTDSKDLLTKQSNEVDANSDSFVDGTLEEQAVENINV VKVNEKGGSLDEDHRAVLADAALNVGVQALQGRDCWLCRERVVSLTKHLTATAIHHWLETEIDELVTEERCLLYIQKLRE VIWPEGVFDSSSHRIRSDKQKMATKTQARKCLAEFLPNFVRGLMDQGDYSVAIDEIIDSLQHEKLNK |
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