Gene
| Gene Model ID | pfu_aug2.0_209.1_30428 |
|---|---|
| Locus | scaffold209.1 : 272066 ... 276817 : + |
| To GenomeBrowser | scaffold209.1:272066..276817 |
| Genes list of scaffold | scaffold209.1 |
| Synonym | pfu_aug1.0_27187.1_19162 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_209.1_30428.t1 | 2 | 1 | RRM_6 | 64 | 78 | 5.0e-13 | 48.8 | 0.056 | 170.0 | 2.3 |
| pfu_aug2.0_209.1_30428.t1 | 2 | 1 | RRM_1 | 66 | 78 | 1.6e-13 | 50.0 | 0.51 | 1500.0 | -1.2 |
| pfu_aug2.0_209.1_30428.t1 | 2 | 2 | RRM_6 | 112 | 178 | 5.0e-13 | 48.8 | 3.6e-15 | 1.1e-11 | 44.5 |
| pfu_aug2.0_209.1_30428.t1 | 2 | 2 | RRM_1 | 114 | 178 | 1.6e-13 | 50.0 | 1.7e-16 | 5.0e-13 | 48.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_209.1_30428.t1 | gi|625284866|ref|XP_007634135.1| | PREDICTED: THO complex subunit 4 isoform X2, partial [Cricetulus griseus] | 6.0e-38 |
| pfu_aug2.0_209.1_30428.t1 | gi|675796750|ref|XP_008954798.1| | PREDICTED: THO complex subunit 4 [Pan paniscus] | 7.0e-38 |
| pfu_aug2.0_209.1_30428.t1 | gi|625185027|ref|XP_007652618.1| | PREDICTED: THO complex subunit 4 isoform X1, partial [Cricetulus griseus] | 7.0e-38 |
| pfu_aug2.0_209.1_30428.t1 | gi|671002790|ref|XP_008692256.1| | PREDICTED: THO complex subunit 4 [Ursus maritimus] | 1.0e-37 |
| pfu_aug2.0_209.1_30428.t1 | gi|589950250|ref|XP_006987780.1| | PREDICTED: THO complex subunit 4 [Peromyscus maniculatus bairdii] | 1.0e-37 |
Transcript
| Transcript ID | pfu_aug2.0_209.1_30428.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_209.1_30428.t1 atgtcaacatatatatttagtttcgcagttactattagtagcaattatagagaagttttacagttacccaacctcaattt tgacttaccccagccaaaagagttaccagatgtatggcagcatgatatgtatgatggaggaccaactccaacgaagagat ttggaggtgcaggaggcaatgatggaaaacttcacatctcaaatttagattttggagtaaatgattctgatatacagcca aaagagttaccagatgtatggcagcatgatatgtatgatggaggaccaactccaacgaagagatttggaggtgcaggagg caatgatggaaaacttcacatctcaaatttagattttggagtaaatgattctgatatacaggaattgtttgcagaatttg gtcctttaaaaaaagcagctgtacattatgatagatctggtagatcactaggcacagcagaggttatatttgaacgcagg gccgatgcacagaaggccttaaaacagtataataatgtacctcttgatggtaagtag |
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Protein
| Protein ID | pfu_aug2.0_209.1_30428.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_209.1_30428.t1 MSTYIFSFAVTISSNYREVLQLPNLNFDLPQPKELPDVWQHDMYDGGPTPTKRFGGAGGNDGKLHISNLDFGVNDSDIQP KELPDVWQHDMYDGGPTPTKRFGGAGGNDGKLHISNLDFGVNDSDIQELFAEFGPLKKAAVHYDRSGRSLGTAEVIFERR ADAQKALKQYNNVPLDGK |
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