Gene
| Gene Model ID | pfu_aug2.0_21.1_03422 |
|---|---|
| Locus | scaffold21.1 : 72880 ... 117745 : - |
| To GenomeBrowser | scaffold21.1:72880..117745 |
| Genes list of scaffold | scaffold21.1 |
| Synonym | pfu_aug1.0_4525.1_08923 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pangolin isoform x2 | GO:0005488 GO:0016055 GO:0021536 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_21.1_03422.t2 | 2 | 1 | HMG_box | 234 | 246 | 1.1e-08 | 35.1 | 0.092 | 680.0 | 0.6 |
| pfu_aug2.0_21.1_03422.t2 | 2 | 2 | HMG_box | 244 | 281 | 1.1e-08 | 35.1 | 5.2e-12 | 3.9e-08 | 33.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_21.1_03422.t2 | gi|524881435|ref|XP_005097369.1| | PREDICTED: transcription factor 7-like 2-like, partial [Aplysia californica] | 5.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_21.1_03422.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_21.1_03422.t1 atgccgcatgtgaactctggcggctctgaagactttttctcaaacgatgaagtgaaagtttacaaagatgaaggcgagga agagcagagatcttcggaaaatttatcagaggataagctcggtctagttaccgaaacagaggagggtaaaagtaatggaa ttggtagtaatttccatgggaatgagaaatcagacggttccagatccgacgatggtaaaagtggacaggcccaggacagg agtagtggtcagtttggttatgtaccaccgtacccacactatcctaatggatcttctcccttgggcagcaaattccagcc tcccatgagcggtctgatgatgtataataatgaaccgtttgcccaaccccctccggcacacatgggtattccgccagttc atatagaccccaaaacaggtctcccccggccctccatgtatgcgtaccctccccccggacagttccctcctagtctatac agtccagacctatcacaagtgcaatggcgtggcccacattatcccatttcctcaggggccttctcaggggcagcttatcc accctcattagtcaactcatcaccattatcacgttttgggcccccagggctctttccacctcccggtcttcatcctggca tgccccacccaggcttgatgtccccaggaagcaagccagagggcgccatctcagcacatagtcaagataggcgtggccca cattatcccatttcctcaggggccttctcaggggcagcttatccaccctcattagtcaactcatcaccattatcacgttt tgggcccccagggctctttccacctcccggtcttcatcctggcatgccccacccaggcttgatgtccccaggaagcaagc cagagggcgccatctcagcacatagtcaagataggtaa |
|
| Transcript ID | pfu_aug2.0_21.1_03422.t2 |
| Definition | - |
>pfu_aug2.0_21.1_03422.t2 atgttcaaatacaaagctaggttactttctgacttcagtccgtgtgagggcagcaaattccagcctcccatgagcggtct gatgatgtataataatgaaccgtttgcccaaccccctccggcacacatgggtattccgccagttcatatagaccccaaaa caggtctcccccggccctccatgtatgcgtaccctccccccggacagttccctcctagtctatacagtccagacctatca caagtgcaatggcgtggcccacattatcccatttcctcaggggccttctcaggggcagcttatccaccctcattagtcaa ctcatcaccattatcacgttttgggcccccagggctctttccacctcccggtcttcatcctggcatgccccacccaggct tgatgtccccaggaagcaagccagagggcgccatctcagcacatagtcaagataggcgtggcccacattatcccatttcc tcaggggccttctcaggggcagcttatccaccctcattagtcaactcatcaccattatcacgttttgggcccccagggct ctttccacctcccggtcttcatcctggcatgccccacccaggcttgatgtccccaggaagcaagccagagggcgccatct cagcacatagtcaagatagagatgatttagaacatggcaacggtagtagacattctggaaatctaccagatgaaaaaaag aaaaattatgtaaagaaacccttaaatgccttcatgctttttatgaaagaagtgcgggccaaagttgtttccgaatgtac attaaaagagtctgcggcaataaaccaaattctaggtagaagagtagaaacagtttcatattggcattggatgatagttg gtatgattgatgaagcaagagaccttagaaaacacaaaagcaaagaaaaacaaaagtga |
|
Protein
| Protein ID | pfu_aug2.0_21.1_03422.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_21.1_03422.t1 MPHVNSGGSEDFFSNDEVKVYKDEGEEEQRSSENLSEDKLGLVTETEEGKSNGIGSNFHGNEKSDGSRSDDGKSGQAQDR SSGQFGYVPPYPHYPNGSSPLGSKFQPPMSGLMMYNNEPFAQPPPAHMGIPPVHIDPKTGLPRPSMYAYPPPGQFPPSLY SPDLSQVQWRGPHYPISSGAFSGAAYPPSLVNSSPLSRFGPPGLFPPPGLHPGMPHPGLMSPGSKPEGAISAHSQDRRGP HYPISSGAFSGAAYPPSLVNSSPLSRFGPPGLFPPPGLHPGMPHPGLMSPGSKPEGAISAHSQDR |
|
| Protein ID | pfu_aug2.0_21.1_03422.t2 |
| Definition | - |
>pfu_aug2.0_21.1_03422.t2 MFKYKARLLSDFSPCEGSKFQPPMSGLMMYNNEPFAQPPPAHMGIPPVHIDPKTGLPRPSMYAYPPPGQFPPSLYSPDLS QVQWRGPHYPISSGAFSGAAYPPSLVNSSPLSRFGPPGLFPPPGLHPGMPHPGLMSPGSKPEGAISAHSQDRRGPHYPIS SGAFSGAAYPPSLVNSSPLSRFGPPGLFPPPGLHPGMPHPGLMSPGSKPEGAISAHSQDRDDLEHGNGSRHSGNLPDEKK KNYVKKPLNAFMLFMKEVRAKVVSECTLKESAAINQILGRRVETVSYWHWMIVGMIDEARDLRKHKSKEKQK |
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